Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47155 * 2 1 4 4 C 1.34768 * 120.00099 * 179.97438 * 3 2 1 5 5 O 1.21587 * 120.00035 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00294 * 179.97438 * 4 3 2 7 7 C 1.47575 * 134.49576 * 180.02562 * 6 4 3 8 8 C 1.53952 * 86.11883 * 155.35932 * 7 6 4 9 9 O 1.42896 * 113.73968 * 269.15538 * 8 7 6 10 10 C 1.50696 * 113.74096 * 137.94737 * 8 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47581 * 134.48697 * 359.97438 * 6 4 3 19 19 H 1.09000 * 109.47282 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47431 * 300.00290 * 1 2 3 21 21 H 1.09003 * 109.47091 * 60.00097 * 1 2 3 22 22 H 1.08997 * 109.47431 * 239.99710 * 2 1 3 23 23 H 1.08994 * 109.47029 * 119.99581 * 2 1 3 24 24 H 0.97000 * 119.99682 * 359.97438 * 3 2 1 25 25 H 1.08992 * 113.77450 * 41.05752 * 7 6 4 26 26 H 1.09008 * 113.87093 * 269.66964 * 7 6 4 27 27 H 0.96697 * 113.99744 * 178.07719 * 9 8 7 28 28 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 29 29 H 1.09002 * 113.76822 * 90.34347 * 18 6 4 30 30 H 1.08998 * 113.77440 * 318.94601 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1334 0.7034 0.0005 6 7 3.7926 2.8983 0.0000 7 6 5.1299 3.5225 -0.0002 8 6 4.4450 4.7432 -0.6412 9 8 4.4367 4.7139 -2.0698 10 6 4.9114 6.0630 -0.0831 11 1 5.6607 6.0861 0.6943 12 6 4.3823 7.2412 -0.5659 13 7 4.7897 8.3931 -0.0793 14 14 3.0867 7.2012 -1.9110 15 1 3.7502 7.2449 -3.2388 16 1 2.2918 5.9522 -1.7957 17 1 2.1882 8.3748 -1.7678 18 6 3.1448 4.2243 -0.0016 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 1.3879 2.1185 -0.0004 25 1 5.8462 3.0265 -0.6550 26 1 5.5271 3.7147 0.9966 27 1 3.9817 5.4643 -2.4759 28 1 4.4176 9.2220 -0.4192 29 1 2.9564 4.6223 0.9955 30 1 2.2766 4.2884 -0.6575 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306496697.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = -55.784787 kcal Electronic energy + Delta-G solvation = -14678.578587 eV Core-core repulsion = 12088.868984 eV Total energy + Delta-G solvation = -2589.709603 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.49472 -39.63847 -36.35348 -36.11501 -34.53693 -31.88852 -29.90669 -27.27831 -26.99515 -23.67823 -22.17504 -20.80542 -19.53286 -18.77822 -18.18751 -17.34593 -16.88416 -15.95516 -15.74510 -15.28733 -15.18338 -14.77751 -14.50514 -14.11389 -13.88002 -13.25399 -12.92947 -12.71571 -12.63614 -12.42533 -12.38587 -11.93434 -11.64783 -11.13379 -10.94437 -10.53968 -10.25556 -9.47199 -8.41335 -6.53674 1.25931 1.29107 1.41747 1.53389 2.11181 2.18908 2.76554 2.93746 3.31809 3.85856 4.10198 4.23006 4.38459 4.41548 4.52489 4.53400 4.67526 4.77329 4.93387 4.95064 5.06295 5.24798 5.30280 5.53097 6.04928 6.23870 6.54365 6.68887 7.03576 7.14353 7.53084 8.74088 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044075 B = 0.008664 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.123756 B = 3231.108980 C = 3547.603412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.129 3.871 3 N -0.735 5.735 4 C 0.717 3.283 5 O -0.644 6.644 6 N -0.657 5.657 7 C 0.144 3.856 8 C 0.185 3.815 9 O -0.560 6.560 10 C -0.543 4.543 11 H 0.057 0.943 12 C 0.027 3.973 13 N -0.924 5.924 14 Si 0.921 3.079 15 H -0.260 1.260 16 H -0.228 1.228 17 H -0.282 1.282 18 C 0.080 3.920 19 H 0.092 0.908 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.407 0.593 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.355 0.645 28 H 0.273 0.727 29 H 0.103 0.897 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 -9.392 -1.131 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 N -0.392 5.392 4 C 0.420 3.580 5 O -0.527 6.527 6 N -0.395 5.395 7 C 0.021 3.979 8 C 0.145 3.855 9 O -0.372 6.372 10 C -0.581 4.581 11 H 0.075 0.925 12 C -0.174 4.174 13 N -0.562 5.562 14 Si 0.746 3.254 15 H -0.186 1.186 16 H -0.152 1.152 17 H -0.208 1.208 18 C -0.043 4.043 19 H 0.111 0.889 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.242 0.758 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.208 0.792 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.987 -10.643 -1.024 15.331 hybrid contribution -0.558 1.287 -0.457 1.475 sum -11.545 -9.355 -1.481 14.933 Atomic orbital electron populations 1.21950 0.91289 1.04479 1.03209 1.21302 0.96224 0.80636 1.01267 1.45100 1.04020 1.10220 1.79814 1.15713 0.83478 0.81281 0.77577 1.90822 1.56631 1.43744 1.61534 1.49133 1.10816 1.03054 1.76507 1.23136 0.85625 0.88770 1.00412 1.20576 0.93127 0.93359 0.78486 1.86486 1.80482 1.49393 1.20833 1.21341 1.24848 0.89563 1.22348 0.92517 1.25842 0.98273 0.94761 0.98542 1.70001 1.43941 0.98548 1.43660 0.86302 0.79844 0.79589 0.79677 1.18566 1.15232 1.20808 1.24366 0.98845 0.78867 1.02212 0.88882 0.91167 0.91423 0.92947 0.92585 0.75790 0.91465 0.88217 0.79226 0.91716 0.87936 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.03 71.98 0.72 -1.42 16 2 C 0.13 3.02 6.39 86.38 0.55 3.57 16 3 N -0.74 -21.28 5.56 -478.55 -2.66 -23.94 16 4 C 0.72 28.19 8.76 179.06 1.57 29.76 16 5 O -0.64 -30.10 17.07 -3.99 -0.07 -30.16 16 6 N -0.66 -26.00 3.61 -858.41 -3.10 -29.09 16 7 C 0.14 6.07 8.23 86.48 0.71 6.79 16 8 C 0.19 8.24 1.06 -10.89 -0.01 8.23 16 9 O -0.56 -25.42 13.32 -148.98 -1.98 -27.41 16 10 C -0.54 -28.11 9.20 25.60 0.24 -27.88 16 11 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 12 C 0.03 1.39 5.47 84.66 0.46 1.86 16 13 N -0.92 -52.19 13.96 21.45 0.30 -51.89 16 14 Si 0.92 37.20 24.34 68.60 1.67 38.87 16 15 H -0.26 -10.19 7.06 99.48 0.70 -9.49 16 16 H -0.23 -8.06 5.28 99.48 0.53 -7.53 16 17 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.08 2.96 7.03 86.47 0.61 3.57 16 19 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.41 9.74 8.08 -92.71 -0.75 8.99 16 25 H 0.07 2.90 8.14 -2.39 -0.02 2.89 16 26 H 0.10 3.99 8.09 -2.38 -0.02 3.97 16 27 H 0.36 14.91 3.31 -74.06 -0.24 14.67 16 28 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.10 3.60 8.09 -2.39 -0.02 3.58 16 30 H 0.09 2.80 6.98 -2.39 -0.02 2.79 16 Total: -1.00 -66.63 253.25 -1.02 -67.65 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.03 Total: 31.50 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 4.85 Total: 24.48 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -5.46 Total: -104.93 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -2.05 Total: -57.57 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.67 Total: 38.87 kcal Total: -66.63 -1.02 -67.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306496697.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.864 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds