Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00507 * 2 1 4 4 C 1.52995 * 109.47430 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.82394 * 59.43484 * 4 3 2 6 6 C 1.54385 * 109.83212 * 180.41318 * 4 3 2 7 7 C 1.55310 * 102.25204 * 140.87053 * 6 4 3 8 8 C 1.54947 * 100.94069 * 325.86656 * 7 6 4 9 9 C 1.52996 * 110.31487 * 277.52933 * 8 7 6 10 10 C 1.50704 * 110.30911 * 155.35912 * 8 7 6 11 11 H 1.07997 * 119.99469 * 31.29315 * 10 8 7 12 12 C 1.37871 * 120.00269 * 211.30029 * 10 8 7 13 13 N 1.31516 * 120.00109 * 172.91576 * 12 10 8 14 14 Si 1.86798 * 119.99955 * 352.90832 * 12 10 8 15 15 H 1.48505 * 109.47040 * 86.80520 * 14 12 10 16 16 H 1.48504 * 109.47452 * 206.80346 * 14 12 10 17 17 H 1.48499 * 109.47206 * 326.80753 * 14 12 10 18 18 O 1.43234 * 109.83246 * 298.55010 * 4 3 2 19 19 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46898 * 299.99905 * 1 2 3 21 21 H 1.09001 * 109.47108 * 59.99187 * 1 2 3 22 22 H 1.09001 * 109.46726 * 60.00059 * 3 2 1 23 23 H 1.09000 * 109.47333 * 300.00647 * 3 2 1 24 24 H 1.08997 * 109.47006 * 300.56833 * 5 4 3 25 25 H 1.09001 * 109.47146 * 60.56482 * 5 4 3 26 26 H 1.08992 * 109.47258 * 180.56762 * 5 4 3 27 27 H 1.08995 * 110.84860 * 259.06293 * 6 4 3 28 28 H 1.09007 * 110.84560 * 22.48176 * 6 4 3 29 29 H 1.08994 * 111.12398 * 83.78640 * 7 6 4 30 30 H 1.08996 * 111.12415 * 207.90799 * 7 6 4 31 31 H 1.09001 * 109.47662 * 181.53716 * 9 8 7 32 32 H 1.09002 * 109.47191 * 301.53823 * 9 8 7 33 33 H 1.09005 * 109.47025 * 61.53207 * 9 8 7 34 34 H 0.96998 * 119.99962 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9944 0.4141 -1.2403 6 6 4.1723 2.5909 0.0098 7 6 5.3806 2.3984 0.9664 8 6 4.7998 1.3716 1.9710 9 6 3.9631 2.0845 3.0352 10 6 5.9115 0.5860 2.6177 11 1 6.8752 1.0463 2.7782 12 6 5.6983 -0.7201 3.0042 13 7 6.7025 -1.4494 3.4392 14 14 3.9830 -1.4538 2.9101 15 1 3.7558 -2.0087 1.5515 16 1 3.8527 -2.5386 3.9160 17 1 2.9769 -0.3976 3.1881 18 8 3.9695 0.5040 1.1826 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 1.6887 1.8463 0.8900 23 1 1.6886 1.8464 -0.8899 24 1 3.5461 -0.5794 -1.2373 25 1 3.6835 0.9502 -2.1370 26 1 5.0804 0.3227 -1.2299 27 1 4.5086 2.8719 -0.9882 28 1 3.4748 3.3296 0.4047 29 1 6.2395 1.9868 0.4364 30 1 5.6401 3.3326 1.4644 31 1 3.5841 1.3535 3.7494 32 1 4.5831 2.8139 3.5563 33 1 3.1260 2.5941 2.5580 34 1 6.5524 -2.3682 3.7115 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306550806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = -96.131563 kcal Electronic energy + Delta-G solvation = -15851.784610 eV Core-core repulsion = 13363.865783 eV Total energy + Delta-G solvation = -2487.918827 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.41515 -37.15752 -33.25666 -31.67600 -31.33081 -28.11309 -27.01068 -25.74453 -24.95281 -22.62729 -19.86877 -19.23081 -16.62819 -15.95491 -15.82964 -15.49796 -14.97317 -14.27220 -13.50210 -13.13619 -12.71206 -12.52096 -12.23433 -12.08185 -11.89813 -11.71414 -11.45456 -11.30943 -11.00813 -10.95471 -10.21705 -10.18267 -10.03360 -9.90971 -9.44722 -9.27087 -8.88270 -8.57063 -8.13331 -5.96154 -4.04812 3.53944 3.75663 3.89698 4.05901 4.62830 4.90422 5.21275 5.26305 5.35532 5.41327 5.48235 5.55378 5.59284 5.72613 5.78065 5.85773 6.03492 6.14944 6.23617 6.30358 6.46636 6.48429 6.61891 6.62798 6.79692 6.88046 6.93922 7.44358 7.47990 7.75505 8.30189 8.56829 8.99198 9.69428 11.13104 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.015252 C = 0.012149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.108856 B = 1835.403527 C = 2304.127546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.061 3.939 4 C 0.107 3.893 5 C -0.145 4.145 6 C -0.144 4.144 7 C -0.130 4.130 8 C 0.197 3.803 9 C -0.150 4.150 10 C -0.522 4.522 11 H 0.080 0.920 12 C 0.083 3.917 13 N -0.900 5.900 14 Si 0.923 3.077 15 H -0.275 1.275 16 H -0.319 1.319 17 H -0.262 1.262 18 O -0.354 6.354 19 H 0.081 0.919 20 H 0.037 0.963 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.023 0.977 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 6.987 -7.822 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.016 4.016 4 C 0.067 3.933 5 C -0.202 4.202 6 C -0.182 4.182 7 C -0.168 4.168 8 C 0.159 3.841 9 C -0.208 4.208 10 C -0.559 4.559 11 H 0.098 0.902 12 C -0.121 4.121 13 N -0.537 5.537 14 Si 0.756 3.244 15 H -0.201 1.201 16 H -0.250 1.250 17 H -0.188 1.188 18 O -0.275 6.275 19 H 0.100 0.900 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.880 6.456 -7.709 14.097 hybrid contribution -1.073 0.009 -0.066 1.075 sum -10.953 6.465 -7.774 14.907 Atomic orbital electron populations 1.22703 0.82331 1.02320 0.99305 1.88023 1.18414 1.27640 1.95145 1.23034 0.94493 0.84761 0.99349 1.21945 0.90311 0.92089 0.88929 1.21953 1.02025 1.01047 0.95197 1.23105 0.98624 0.95743 1.00698 1.23217 0.96942 0.99675 0.96936 1.20401 0.88107 0.87840 0.87794 1.22385 0.98380 0.99854 1.00208 1.20807 0.97447 0.97613 1.40028 0.90228 1.24982 0.97825 0.96638 0.92620 1.69971 1.31528 1.08671 1.43490 0.86019 0.84167 0.77418 0.76821 1.20128 1.24962 1.18784 1.88215 1.68351 1.39092 1.31869 0.90013 0.94463 0.94686 0.93318 0.93455 0.91693 0.93030 0.91870 0.90990 0.91509 0.90699 0.91603 0.92588 0.92925 0.95771 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.99 9.95 -42.78 -0.43 -7.41 16 3 C 0.06 1.03 4.94 37.16 0.18 1.22 16 4 C 0.11 2.06 1.03 -89.89 -0.09 1.97 16 5 C -0.14 -2.60 8.59 37.16 0.32 -2.28 16 6 C -0.14 -2.38 5.71 -24.78 -0.14 -2.52 16 7 C -0.13 -2.56 6.04 -24.48 -0.15 -2.71 16 8 C 0.20 4.69 0.67 -90.74 -0.06 4.63 16 9 C -0.15 -3.28 8.50 37.16 0.32 -2.97 16 10 C -0.52 -15.01 8.83 -34.44 -0.30 -15.31 16 11 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 12 C 0.08 2.51 5.46 -17.82 -0.10 2.41 16 13 N -0.90 -28.51 13.96 55.43 0.77 -27.74 16 14 Si 0.92 25.37 24.48 -169.99 -4.16 21.21 16 15 H -0.27 -7.79 7.11 56.52 0.40 -7.39 16 16 H -0.32 -8.76 7.11 56.52 0.40 -8.36 16 17 H -0.26 -7.00 5.54 56.52 0.31 -6.68 16 18 O -0.35 -8.61 5.43 -42.78 -0.23 -8.84 16 19 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 20 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 28 H 0.07 0.99 7.57 -51.93 -0.39 0.60 16 29 H 0.07 1.54 8.05 -51.93 -0.42 1.12 16 30 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 31 H 0.06 1.31 6.10 -51.93 -0.32 1.00 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.46 7.30 -51.93 -0.38 0.08 16 34 H 0.26 7.89 8.31 -40.82 -0.34 7.56 16 LS Contribution 268.10 15.07 4.04 4.04 Total: -1.00 -33.02 268.10 -4.66 -37.68 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -5.74 Total: -4.90 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 1.09 Total: -14.03 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.77 Total: -27.74 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.66 Total: -16.25 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.16 Total: 21.21 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.02 -4.66 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306550806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.454 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds