Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00507 * 2 1 4 4 C 1.52995 * 109.47430 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.82394 * 59.43484 * 4 3 2 6 6 C 1.54385 * 109.83212 * 180.41318 * 4 3 2 7 7 C 1.55310 * 102.25204 * 140.87053 * 6 4 3 8 8 C 1.54947 * 100.94069 * 325.86656 * 7 6 4 9 9 C 1.52996 * 110.31487 * 277.52933 * 8 7 6 10 10 C 1.50704 * 110.30911 * 155.35912 * 8 7 6 11 11 H 1.07997 * 119.99469 * 31.29315 * 10 8 7 12 12 C 1.37871 * 120.00269 * 211.30029 * 10 8 7 13 13 N 1.31516 * 120.00109 * 172.91576 * 12 10 8 14 14 Si 1.86798 * 119.99955 * 352.90832 * 12 10 8 15 15 H 1.48505 * 109.47040 * 86.80520 * 14 12 10 16 16 H 1.48504 * 109.47452 * 206.80346 * 14 12 10 17 17 H 1.48499 * 109.47206 * 326.80753 * 14 12 10 18 18 O 1.43234 * 109.83246 * 298.55010 * 4 3 2 19 19 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46898 * 299.99905 * 1 2 3 21 21 H 1.09001 * 109.47108 * 59.99187 * 1 2 3 22 22 H 1.09001 * 109.46726 * 60.00059 * 3 2 1 23 23 H 1.09000 * 109.47333 * 300.00647 * 3 2 1 24 24 H 1.08997 * 109.47006 * 300.56833 * 5 4 3 25 25 H 1.09001 * 109.47146 * 60.56482 * 5 4 3 26 26 H 1.08992 * 109.47258 * 180.56762 * 5 4 3 27 27 H 1.08995 * 110.84860 * 259.06293 * 6 4 3 28 28 H 1.09007 * 110.84560 * 22.48176 * 6 4 3 29 29 H 1.08994 * 111.12398 * 83.78640 * 7 6 4 30 30 H 1.08996 * 111.12415 * 207.90799 * 7 6 4 31 31 H 1.09001 * 109.47662 * 181.53716 * 9 8 7 32 32 H 1.09002 * 109.47191 * 301.53823 * 9 8 7 33 33 H 1.09005 * 109.47025 * 61.53207 * 9 8 7 34 34 H 0.96998 * 119.99962 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9944 0.4141 -1.2403 6 6 4.1723 2.5909 0.0098 7 6 5.3806 2.3984 0.9664 8 6 4.7998 1.3716 1.9710 9 6 3.9631 2.0845 3.0352 10 6 5.9115 0.5860 2.6177 11 1 6.8752 1.0463 2.7782 12 6 5.6983 -0.7201 3.0042 13 7 6.7025 -1.4494 3.4392 14 14 3.9830 -1.4538 2.9101 15 1 3.7558 -2.0087 1.5515 16 1 3.8527 -2.5386 3.9160 17 1 2.9769 -0.3976 3.1881 18 8 3.9695 0.5040 1.1826 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 1.6887 1.8463 0.8900 23 1 1.6886 1.8464 -0.8899 24 1 3.5461 -0.5794 -1.2373 25 1 3.6835 0.9502 -2.1370 26 1 5.0804 0.3227 -1.2299 27 1 4.5086 2.8719 -0.9882 28 1 3.4748 3.3296 0.4047 29 1 6.2395 1.9868 0.4364 30 1 5.6401 3.3326 1.4644 31 1 3.5841 1.3535 3.7494 32 1 4.5831 2.8139 3.5563 33 1 3.1260 2.5941 2.5580 34 1 6.5524 -2.3682 3.7115 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306550806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = -119.445276 kcal Electronic energy + Delta-G solvation = -15852.795569 eV Core-core repulsion = 13363.865783 eV Total energy + Delta-G solvation = -2488.929786 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97271 -38.46496 -35.14694 -33.49789 -33.09132 -29.63280 -28.29913 -27.39070 -26.55921 -24.15062 -21.46415 -20.93138 -18.72882 -17.33545 -17.17459 -16.85665 -16.59674 -15.99541 -15.11450 -14.70530 -14.65956 -14.24255 -13.75891 -13.54670 -13.40509 -13.28273 -12.99806 -12.76827 -12.65763 -12.27809 -12.18413 -12.12053 -11.64816 -11.51356 -11.14904 -10.81460 -10.74808 -10.53743 -10.01343 -8.30402 -6.37894 1.36675 1.54621 1.67402 2.46047 2.86303 3.04103 3.39640 3.81372 3.99278 4.11398 4.26010 4.39378 4.43762 4.53679 4.54534 4.58141 4.74593 4.77083 4.79541 4.81611 4.89418 5.00177 5.07547 5.18683 5.24014 5.27755 5.47862 5.67040 5.76476 6.21969 6.31918 6.54151 6.83479 7.40167 8.83083 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.015252 C = 0.012149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.108856 B = 1835.403527 C = 2304.127546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.062 3.938 4 C 0.087 3.913 5 C -0.141 4.141 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.185 3.815 9 C -0.144 4.144 10 C -0.518 4.518 11 H 0.048 0.952 12 C 0.031 3.969 13 N -0.946 5.946 14 Si 0.984 3.016 15 H -0.293 1.293 16 H -0.325 1.325 17 H -0.249 1.249 18 O -0.389 6.389 19 H 0.087 0.913 20 H 0.042 0.958 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.311 9.245 -9.395 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.015 4.015 4 C 0.048 3.952 5 C -0.199 4.199 6 C -0.164 4.164 7 C -0.166 4.166 8 C 0.147 3.853 9 C -0.202 4.202 10 C -0.555 4.555 11 H 0.066 0.934 12 C -0.168 4.168 13 N -0.586 5.586 14 Si 0.817 3.183 15 H -0.220 1.220 16 H -0.257 1.257 17 H -0.174 1.174 18 O -0.311 6.311 19 H 0.106 0.894 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.068 0.932 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.111 0.889 26 H 0.064 0.936 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.199 8.743 -9.287 17.649 hybrid contribution -0.325 -0.652 0.350 0.808 sum -12.524 8.091 -8.937 17.384 Atomic orbital electron populations 1.22913 0.80021 1.03367 1.00881 1.87971 1.21090 1.28863 1.95486 1.23053 0.92558 0.84621 1.01222 1.22426 0.92396 0.93343 0.87063 1.21940 1.00674 1.00456 0.96789 1.23074 0.97031 0.94644 1.01649 1.23096 0.97712 0.99074 0.96752 1.20400 0.87532 0.88184 0.89225 1.22247 0.99316 0.99475 0.99176 1.21227 0.97969 0.97608 1.38716 0.93419 1.25672 1.00353 0.97559 0.93169 1.70082 1.33205 1.09139 1.46186 0.85062 0.81346 0.76566 0.75283 1.22044 1.25668 1.17414 1.88062 1.68427 1.40707 1.33855 0.89441 0.93890 0.91969 0.93215 0.89562 0.94043 0.88928 0.93633 0.87861 0.88753 0.92596 0.89594 0.94951 0.91770 0.92443 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -14.36 9.95 -141.76 -1.41 -15.77 16 3 C 0.06 1.85 4.94 71.98 0.36 2.20 16 4 C 0.09 3.05 1.03 -10.32 -0.01 3.04 16 5 C -0.14 -4.74 8.59 71.98 0.62 -4.13 16 6 C -0.13 -3.58 5.71 31.86 0.18 -3.39 16 7 C -0.13 -4.75 6.04 32.05 0.19 -4.56 16 8 C 0.18 8.58 0.67 -10.87 -0.01 8.57 16 9 C -0.14 -5.95 8.50 71.98 0.61 -5.33 16 10 C -0.52 -30.34 8.83 25.60 0.23 -30.12 16 11 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 12 C 0.03 1.91 5.46 84.65 0.46 2.38 16 13 N -0.95 -62.19 13.96 21.45 0.30 -61.89 16 14 Si 0.98 54.15 24.48 68.60 1.68 55.83 16 15 H -0.29 -16.74 7.11 99.48 0.71 -16.03 16 16 H -0.33 -17.84 7.11 99.48 0.71 -17.13 16 17 H -0.25 -12.97 5.54 99.48 0.55 -12.42 16 18 O -0.39 -18.33 5.43 -141.76 -0.77 -19.10 16 19 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.05 1.46 7.86 -2.39 -0.02 1.44 16 23 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.04 1.56 7.67 -2.39 -0.02 1.54 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.10 2.31 7.82 -2.39 -0.02 2.29 16 28 H 0.09 2.19 7.57 -2.38 -0.02 2.17 16 29 H 0.06 2.24 8.05 -2.39 -0.02 2.22 16 30 H 0.09 2.80 8.03 -2.39 -0.02 2.78 16 31 H 0.03 1.45 6.10 -2.39 -0.01 1.44 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 33 H 0.06 1.96 7.30 -2.38 -0.02 1.95 16 34 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 Total: -1.00 -74.01 268.10 4.57 -69.44 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: 0.89 Total: 0.99 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.88 Total: -29.51 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.30 Total: -61.89 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -2.18 Total: -34.86 kcal Atomic # 14 Polarization: 54.15 SS G_CDS: 1.68 Total: 55.83 kcal Total: -74.01 4.57 -69.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306550806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.003 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds