Wall clock time and date at job start Mon Mar 30 2020 02:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99958 * 2 1 4 4 C 1.52995 * 109.47026 * 179.97438 * 3 2 1 5 5 C 1.53002 * 110.35953 * 304.31518 * 4 3 2 6 6 C 1.55503 * 110.28399 * 182.20315 * 4 3 2 7 7 C 1.55305 * 100.69731 * 204.65557 * 6 4 3 8 8 C 1.54382 * 102.43395 * 34.13038 * 7 6 4 9 9 C 1.53004 * 109.83068 * 98.14767 * 8 7 6 10 10 C 1.50699 * 109.83066 * 219.02306 * 8 7 6 11 11 H 1.08006 * 119.99747 * 0.02562 * 10 8 7 12 12 C 1.37876 * 120.00153 * 180.02562 * 10 8 7 13 13 N 1.31508 * 120.00014 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99940 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47371 * 59.99693 * 14 12 10 16 16 H 1.48502 * 109.47081 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47146 * 299.99363 * 14 12 10 18 18 O 1.43232 * 107.59109 * 338.54226 * 8 7 6 19 19 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47071 * 299.99984 * 1 2 3 21 21 H 1.08999 * 109.46657 * 59.99584 * 1 2 3 22 22 H 1.09008 * 109.47001 * 60.00433 * 3 2 1 23 23 H 1.08996 * 109.47300 * 300.00378 * 3 2 1 24 24 H 1.08994 * 109.47281 * 180.69112 * 5 4 3 25 25 H 1.09005 * 109.46722 * 300.68655 * 5 4 3 26 26 H 1.08996 * 109.47078 * 60.68623 * 5 4 3 27 27 H 1.08999 * 111.32643 * 86.78498 * 6 4 3 28 28 H 1.08995 * 111.14910 * 322.45919 * 6 4 3 29 29 H 1.09002 * 110.85041 * 275.83884 * 7 6 4 30 30 H 1.09001 * 110.84389 * 152.42021 * 7 6 4 31 31 H 1.09000 * 109.47072 * 59.99669 * 9 8 7 32 32 H 1.08997 * 109.47260 * 180.02562 * 9 8 7 33 33 H 1.09007 * 109.46884 * 299.99751 * 9 8 7 34 34 H 0.97005 * 120.00196 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0017 0.3367 1.1858 6 6 4.1879 2.5951 0.0567 7 6 5.5700 2.2991 -0.5869 8 6 5.2251 1.2163 -1.6318 9 6 5.0691 1.8579 -3.0121 10 6 6.3165 0.1780 -1.6714 11 1 7.1739 0.2707 -1.0212 12 6 6.2206 -0.8904 -2.5377 13 7 5.1769 -1.0030 -3.3298 14 14 7.5732 -2.1778 -2.5862 15 1 7.7025 -2.8106 -1.2491 16 1 7.2336 -3.2149 -3.5934 17 1 8.8586 -1.5317 -2.9545 18 8 3.9905 0.6087 -1.2341 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 1.6887 1.8464 0.8901 23 1 1.6886 1.8464 -0.8899 24 1 5.0896 0.2703 1.1793 25 1 3.6715 0.7995 2.1158 26 1 3.5762 -0.6636 1.1065 27 1 4.2991 2.9398 1.0848 28 1 3.6234 3.3134 -0.5377 29 1 6.2690 1.9134 0.1553 30 1 5.9718 3.1900 -1.0696 31 1 6.0023 2.3457 -3.2935 32 1 4.8253 1.0887 -3.7448 33 1 4.2680 2.5965 -2.9810 34 1 5.1092 -1.7548 -3.9390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306550807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:28 Heat of formation + Delta-G solvation = -94.931564 kcal Electronic energy + Delta-G solvation = -15603.770224 eV Core-core repulsion = 13115.903432 eV Total energy + Delta-G solvation = -2487.866791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90203 -36.95582 -33.24476 -31.18673 -30.85540 -27.58732 -26.77920 -25.48565 -24.93641 -22.43714 -19.59520 -18.95226 -16.37466 -15.78395 -15.51697 -15.15502 -14.63621 -14.28757 -13.50449 -13.08037 -12.55710 -12.20609 -11.84041 -11.71332 -11.54771 -11.35368 -11.10526 -10.89271 -10.77523 -10.54063 -10.42061 -10.29963 -9.95283 -9.76862 -9.34361 -9.22707 -8.96812 -8.37078 -7.74947 -5.83963 -4.00262 3.37812 3.42703 3.44815 4.24309 4.50684 4.93336 5.41741 5.49029 5.51748 5.59074 5.68150 5.75755 5.80145 5.90602 5.94224 6.14350 6.23388 6.42946 6.50036 6.61417 6.72478 6.78750 6.86324 6.99927 7.15781 7.22868 7.50934 7.65911 7.88143 8.19508 8.47006 8.76888 9.17466 9.70455 11.17700 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.011102 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.235454 B = 2521.443500 C = 2833.787571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.075 3.925 4 C 0.103 3.897 5 C -0.146 4.146 6 C -0.147 4.147 7 C -0.139 4.139 8 C 0.227 3.773 9 C -0.138 4.138 10 C -0.533 4.533 11 H 0.056 0.944 12 C 0.082 3.918 13 N -0.859 5.859 14 Si 0.886 3.114 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 O -0.333 6.333 19 H 0.080 0.920 20 H 0.032 0.968 21 H 0.036 0.964 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.090 0.910 33 H 0.009 0.991 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 5.304 6.056 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C -0.002 4.002 4 C 0.062 3.938 5 C -0.204 4.204 6 C -0.184 4.184 7 C -0.176 4.176 8 C 0.189 3.811 9 C -0.196 4.196 10 C -0.571 4.571 11 H 0.074 0.926 12 C -0.123 4.123 13 N -0.495 5.495 14 Si 0.713 3.287 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.204 1.204 18 O -0.252 6.252 19 H 0.099 0.901 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.028 0.972 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.605 4.861 5.781 9.405 hybrid contribution 0.568 -0.309 0.105 0.655 sum -5.037 4.552 5.886 8.985 Atomic orbital electron populations 1.22674 0.82612 1.02150 0.99108 1.88044 1.18125 1.27697 1.95102 1.22692 0.93918 0.84591 0.98966 1.22166 0.90303 0.91707 0.89576 1.21995 1.01949 1.00778 0.95655 1.23295 0.98102 0.96728 1.00321 1.23199 0.95318 0.99665 0.99454 1.19636 0.82939 0.89004 0.89492 1.21979 0.97147 0.99216 1.01259 1.21209 1.04721 1.08972 1.22169 0.92602 1.24976 0.95004 0.97455 0.94887 1.69940 1.27616 1.29633 1.22299 0.86792 0.82432 0.81628 0.77823 1.20251 1.21298 1.20357 1.88849 1.40396 1.61595 1.34381 0.90136 0.94972 0.94524 0.93792 0.93389 0.91975 0.94126 0.91789 0.91676 0.91706 0.91692 0.92276 0.94670 0.89142 0.97165 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -7.32 9.93 -36.86 -0.37 -7.68 16 3 C 0.08 1.39 5.17 37.15 0.19 1.58 16 4 C 0.10 2.17 0.98 -89.29 -0.09 2.08 16 5 C -0.15 -2.93 8.67 37.16 0.32 -2.61 16 6 C -0.15 -2.69 6.09 -24.18 -0.15 -2.84 16 7 C -0.14 -2.92 5.67 -24.78 -0.14 -3.06 16 8 C 0.23 5.79 0.82 -91.05 -0.07 5.71 16 9 C -0.14 -3.46 8.51 37.16 0.32 -3.14 16 10 C -0.53 -14.94 8.22 -34.44 -0.28 -15.23 16 11 H 0.06 1.54 7.52 -52.48 -0.39 1.14 16 12 C 0.08 2.33 5.26 -17.82 -0.09 2.24 16 13 N -0.86 -25.41 10.92 55.43 0.60 -24.80 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 O -0.33 -8.81 9.56 -36.86 -0.35 -9.16 16 19 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 20 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 1.31 7.45 -51.93 -0.39 0.92 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.37 7.66 -51.93 -0.40 0.98 16 27 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 28 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 29 H 0.06 1.36 7.28 -51.93 -0.38 0.98 16 30 H 0.06 1.15 7.82 -51.93 -0.41 0.74 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 2.52 6.01 -51.93 -0.31 2.20 16 33 H 0.01 0.22 8.14 -51.92 -0.42 -0.21 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 274.94 15.07 4.14 4.14 Total: -1.00 -31.18 274.94 -5.50 -36.69 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.63 Total: -2.22 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 1.12 Total: -13.69 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.60 Total: -24.80 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.72 Total: -16.84 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.18 -5.50 -36.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306550807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.245 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds