Wall clock time and date at job start Mon Mar 30 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99958 * 2 1 4 4 C 1.52995 * 109.47026 * 179.97438 * 3 2 1 5 5 C 1.53002 * 110.35953 * 304.31518 * 4 3 2 6 6 C 1.55503 * 110.28399 * 182.20315 * 4 3 2 7 7 C 1.55305 * 100.69731 * 204.65557 * 6 4 3 8 8 C 1.54382 * 102.43395 * 34.13038 * 7 6 4 9 9 C 1.53004 * 109.83068 * 98.14767 * 8 7 6 10 10 C 1.50699 * 109.83066 * 219.02306 * 8 7 6 11 11 H 1.08006 * 119.99747 * 0.02562 * 10 8 7 12 12 C 1.37876 * 120.00153 * 180.02562 * 10 8 7 13 13 N 1.31508 * 120.00014 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99940 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47371 * 59.99693 * 14 12 10 16 16 H 1.48502 * 109.47081 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47146 * 299.99363 * 14 12 10 18 18 O 1.43232 * 107.59109 * 338.54226 * 8 7 6 19 19 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47071 * 299.99984 * 1 2 3 21 21 H 1.08999 * 109.46657 * 59.99584 * 1 2 3 22 22 H 1.09008 * 109.47001 * 60.00433 * 3 2 1 23 23 H 1.08996 * 109.47300 * 300.00378 * 3 2 1 24 24 H 1.08994 * 109.47281 * 180.69112 * 5 4 3 25 25 H 1.09005 * 109.46722 * 300.68655 * 5 4 3 26 26 H 1.08996 * 109.47078 * 60.68623 * 5 4 3 27 27 H 1.08999 * 111.32643 * 86.78498 * 6 4 3 28 28 H 1.08995 * 111.14910 * 322.45919 * 6 4 3 29 29 H 1.09002 * 110.85041 * 275.83884 * 7 6 4 30 30 H 1.09001 * 110.84389 * 152.42021 * 7 6 4 31 31 H 1.09000 * 109.47072 * 59.99669 * 9 8 7 32 32 H 1.08997 * 109.47260 * 180.02562 * 9 8 7 33 33 H 1.09007 * 109.46884 * 299.99751 * 9 8 7 34 34 H 0.97005 * 120.00196 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0017 0.3367 1.1858 6 6 4.1879 2.5951 0.0567 7 6 5.5700 2.2991 -0.5869 8 6 5.2251 1.2163 -1.6318 9 6 5.0691 1.8579 -3.0121 10 6 6.3165 0.1780 -1.6714 11 1 7.1739 0.2707 -1.0212 12 6 6.2206 -0.8904 -2.5377 13 7 5.1769 -1.0030 -3.3298 14 14 7.5732 -2.1778 -2.5862 15 1 7.7025 -2.8106 -1.2491 16 1 7.2336 -3.2149 -3.5934 17 1 8.8586 -1.5317 -2.9545 18 8 3.9905 0.6087 -1.2341 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 1.6887 1.8464 0.8901 23 1 1.6886 1.8464 -0.8899 24 1 5.0896 0.2703 1.1793 25 1 3.6715 0.7995 2.1158 26 1 3.5762 -0.6636 1.1065 27 1 4.2991 2.9398 1.0848 28 1 3.6234 3.3134 -0.5377 29 1 6.2690 1.9134 0.1553 30 1 5.9718 3.1900 -1.0696 31 1 6.0023 2.3457 -3.2935 32 1 4.8253 1.0887 -3.7448 33 1 4.2680 2.5965 -2.9810 34 1 5.1092 -1.7548 -3.9390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306550807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:27 Heat of formation + Delta-G solvation = -115.595270 kcal Electronic energy + Delta-G solvation = -15604.666269 eV Core-core repulsion = 13115.903432 eV Total energy + Delta-G solvation = -2488.762837 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56397 -38.39242 -35.17413 -32.98589 -32.67261 -29.23923 -28.22248 -27.29728 -26.55494 -24.07008 -21.34985 -20.65455 -18.39108 -17.15505 -16.95573 -16.68708 -16.54472 -15.86892 -15.30765 -14.64622 -14.11881 -14.02855 -13.50063 -13.32275 -13.11851 -12.95788 -12.84742 -12.72454 -12.49168 -12.27119 -12.09638 -12.03122 -11.89151 -11.35157 -11.07139 -10.86974 -10.50569 -10.49753 -9.65021 -7.96707 -6.19451 1.40676 1.42685 1.49324 2.45650 2.95486 3.14516 3.57696 3.93739 4.13223 4.20756 4.35957 4.44159 4.56864 4.59613 4.61434 4.72786 4.84865 4.87827 4.88473 4.98077 5.02809 5.13031 5.17015 5.25904 5.33765 5.58475 5.63153 5.75394 6.18260 6.38810 6.40369 6.75166 7.26585 7.56871 9.03159 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.011102 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.235454 B = 2521.443500 C = 2833.787571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.078 3.922 4 C 0.083 3.917 5 C -0.139 4.139 6 C -0.131 4.131 7 C -0.136 4.136 8 C 0.212 3.788 9 C -0.132 4.132 10 C -0.549 4.549 11 H 0.052 0.948 12 C 0.031 3.969 13 N -0.890 5.890 14 Si 0.944 3.056 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.267 1.267 18 O -0.373 6.373 19 H 0.089 0.911 20 H 0.060 0.940 21 H 0.041 0.959 22 H 0.083 0.917 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 6.554 7.557 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.001 3.999 4 C 0.043 3.957 5 C -0.196 4.196 6 C -0.169 4.169 7 C -0.173 4.173 8 C 0.174 3.826 9 C -0.190 4.190 10 C -0.587 4.587 11 H 0.070 0.930 12 C -0.171 4.171 13 N -0.527 5.527 14 Si 0.770 3.230 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.192 1.192 18 O -0.293 6.293 19 H 0.107 0.893 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.965 6.123 7.292 11.236 hybrid contribution 0.625 -0.691 -0.324 0.986 sum -5.341 5.432 6.968 10.324 Atomic orbital electron populations 1.22894 0.80113 1.03360 1.00668 1.87987 1.21011 1.28716 1.95432 1.22691 0.92104 0.84528 1.00546 1.22604 0.92344 0.93046 0.87704 1.21910 1.00459 0.99836 0.97401 1.23255 0.95773 0.95389 1.02439 1.23089 0.97084 0.98735 0.98424 1.19718 0.82414 0.89621 0.90840 1.21862 0.97964 0.98580 1.00549 1.21640 1.05535 1.09840 1.21658 0.93019 1.25717 0.97039 0.99518 0.94811 1.70106 1.29396 1.30096 1.23116 0.85859 0.80259 0.79274 0.77616 1.20195 1.21169 1.19187 1.88769 1.40507 1.63095 1.36969 0.89279 0.92146 0.94082 0.89881 0.93869 0.93888 0.90228 0.94332 0.88121 0.90237 0.92155 0.90734 0.94063 0.92546 0.95386 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.93 16 2 O -0.41 -15.75 9.93 -147.42 -1.46 -17.22 16 3 C 0.08 2.68 5.17 71.98 0.37 3.05 16 4 C 0.08 3.35 0.98 -9.93 -0.01 3.34 16 5 C -0.14 -5.36 8.67 71.98 0.62 -4.74 16 6 C -0.13 -4.36 6.09 32.25 0.20 -4.17 16 7 C -0.14 -5.46 5.67 31.86 0.18 -5.28 16 8 C 0.21 10.78 0.82 -11.07 -0.01 10.77 16 9 C -0.13 -6.60 8.51 71.98 0.61 -5.99 16 10 C -0.55 -31.13 8.22 25.60 0.21 -30.92 16 11 H 0.05 2.87 7.52 -2.91 -0.02 2.85 16 12 C 0.03 1.79 5.26 84.66 0.45 2.24 16 13 N -0.89 -54.13 10.92 21.45 0.23 -53.90 16 14 Si 0.94 45.34 29.54 68.60 2.03 47.36 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 O -0.37 -19.84 9.56 -147.42 -1.41 -21.25 16 19 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 20 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.78 7.45 -2.39 -0.02 1.76 16 25 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.04 1.64 7.66 -2.39 -0.02 1.63 16 27 H 0.10 2.64 8.04 -2.39 -0.02 2.62 16 28 H 0.08 2.42 8.06 -2.39 -0.02 2.40 16 29 H 0.06 2.44 7.28 -2.39 -0.02 2.42 16 30 H 0.07 2.72 7.82 -2.39 -0.02 2.70 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 3.21 6.01 -2.39 -0.01 3.19 16 33 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -68.58 274.94 4.31 -64.27 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.05 Total: 10.48 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.87 Total: -29.75 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.23 Total: -53.90 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -2.87 Total: -38.46 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.58 4.31 -64.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306550807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.324 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds