Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00088 * 2 1 4 4 C 1.53001 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.52999 * 110.35234 * 60.68978 * 4 3 2 6 6 C 1.54940 * 110.31180 * 182.83640 * 4 3 2 7 7 C 1.55300 * 100.94415 * 155.36050 * 6 4 3 8 8 C 1.54377 * 102.25502 * 325.86750 * 7 6 4 9 9 C 1.52992 * 109.83433 * 140.86609 * 8 7 6 10 10 C 1.50704 * 109.82957 * 261.84335 * 8 7 6 11 11 H 1.07997 * 120.00263 * 359.58603 * 10 8 7 12 12 C 1.37875 * 119.99759 * 179.58352 * 10 8 7 13 13 N 1.31519 * 120.00183 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99883 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47186 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47168 * 120.00014 * 14 12 10 17 17 H 1.48498 * 109.47281 * 240.00206 * 14 12 10 18 18 O 1.43245 * 107.58529 * 21.35358 * 8 7 6 19 19 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 20 20 H 1.09009 * 109.46725 * 299.99768 * 1 2 3 21 21 H 1.08993 * 109.47390 * 59.99228 * 1 2 3 22 22 H 1.09005 * 109.47009 * 60.00669 * 3 2 1 23 23 H 1.09000 * 109.47600 * 300.00344 * 3 2 1 24 24 H 1.08996 * 109.47173 * 299.31181 * 5 4 3 25 25 H 1.09005 * 109.46663 * 59.31261 * 5 4 3 26 26 H 1.08994 * 109.47072 * 179.30945 * 5 4 3 27 27 H 1.09007 * 111.12756 * 37.44000 * 6 4 3 28 28 H 1.09003 * 111.16152 * 273.29689 * 6 4 3 29 29 H 1.09006 * 110.85287 * 207.67375 * 7 6 4 30 30 H 1.09004 * 111.02471 * 84.13526 * 7 6 4 31 31 H 1.09003 * 109.47740 * 300.41691 * 9 8 7 32 32 H 1.09004 * 109.47149 * 60.41394 * 9 8 7 33 33 H 1.09002 * 109.47438 * 180.41272 * 9 8 7 34 34 H 0.96998 * 119.99956 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0100 0.4427 -1.2518 6 6 4.1863 2.5888 0.0712 7 6 5.5656 2.2430 0.6954 8 6 5.2140 1.0735 1.6398 9 6 6.3219 0.0194 1.5956 10 6 5.0487 1.5852 3.0476 11 1 5.1856 2.6352 3.2601 12 6 4.7228 0.7129 4.0644 13 7 4.5565 -0.5659 3.8057 14 14 4.5186 1.3471 5.8095 15 1 4.7578 2.8125 5.8349 16 1 3.1396 1.0629 6.2813 17 1 5.4957 0.6701 6.6997 18 8 3.9821 0.5032 1.1824 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8898 22 1 1.6887 1.8463 0.8901 23 1 1.6886 1.8464 -0.8899 24 1 3.5841 -0.5605 -1.2628 25 1 3.6860 0.9848 -2.1403 26 1 5.0978 0.3756 -1.2437 27 1 3.6165 3.2531 0.7211 28 1 4.3020 3.0203 -0.9231 29 1 5.9607 3.0896 1.2568 30 1 6.2725 1.9239 -0.0706 31 1 6.4293 -0.3525 0.5766 32 1 7.2617 0.4662 1.9201 33 1 6.0643 -0.8066 2.2586 34 1 4.3276 -1.1796 4.5211 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306550808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -115.735360 kcal Electronic energy + Delta-G solvation = -15627.986976 eV Core-core repulsion = 13139.218064 eV Total energy + Delta-G solvation = -2488.768912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58257 -38.38588 -35.18649 -33.00257 -32.60181 -29.47727 -28.26364 -27.14636 -26.55022 -23.95314 -21.46145 -20.62363 -18.62592 -17.13579 -16.97394 -16.67845 -16.29614 -15.82477 -15.20586 -14.77275 -14.25859 -14.16079 -13.54134 -13.25259 -13.16766 -12.93545 -12.76999 -12.73542 -12.45307 -12.24342 -12.13514 -12.03174 -11.88436 -11.33823 -11.08524 -10.86394 -10.54242 -10.49561 -9.64572 -7.97150 -6.20388 1.39390 1.41300 1.51866 2.44961 2.94175 3.15472 3.58600 3.93662 4.14272 4.20700 4.32837 4.43151 4.55163 4.58599 4.60902 4.75449 4.82649 4.83443 4.91838 4.95128 5.11177 5.11491 5.16417 5.22651 5.40188 5.53483 5.59867 5.72573 6.15846 6.37077 6.41164 6.74990 7.27247 7.56439 9.03218 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.012150 C = 0.010042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.840395 B = 2303.894408 C = 2787.528515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.078 3.922 4 C 0.082 3.918 5 C -0.143 4.143 6 C -0.127 4.127 7 C -0.136 4.136 8 C 0.211 3.789 9 C -0.134 4.134 10 C -0.546 4.546 11 H 0.054 0.946 12 C 0.030 3.970 13 N -0.890 5.890 14 Si 0.946 3.054 15 H -0.265 1.265 16 H -0.286 1.286 17 H -0.279 1.279 18 O -0.371 6.371 19 H 0.091 0.909 20 H 0.035 0.965 21 H 0.061 0.939 22 H 0.033 0.967 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 5.058 -9.054 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.002 3.998 4 C 0.042 3.958 5 C -0.201 4.201 6 C -0.164 4.164 7 C -0.174 4.174 8 C 0.174 3.826 9 C -0.192 4.192 10 C -0.584 4.584 11 H 0.073 0.927 12 C -0.172 4.172 13 N -0.527 5.527 14 Si 0.772 3.228 15 H -0.189 1.189 16 H -0.213 1.213 17 H -0.205 1.205 18 O -0.291 6.291 19 H 0.109 0.891 20 H 0.054 0.946 21 H 0.080 0.920 22 H 0.052 0.948 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.132 4.550 -8.875 10.796 hybrid contribution -0.214 0.292 1.235 1.287 sum -4.346 4.842 -7.640 10.035 Atomic orbital electron populations 1.22887 0.80260 1.03389 1.00472 1.87960 1.20870 1.28577 1.95392 1.22675 0.92553 0.84525 1.00085 1.22516 0.92368 0.92494 0.88442 1.22019 1.00722 1.00538 0.96782 1.23077 0.95884 0.95658 1.01822 1.23095 0.97067 0.98963 0.98239 1.19728 0.82166 0.88962 0.91782 1.21911 0.97580 1.01241 0.98445 1.21659 1.49295 0.94029 0.93451 0.92748 1.25748 0.94145 0.95006 1.02304 1.70149 1.46637 1.03336 1.32600 0.85716 0.77378 0.78883 0.80819 1.18892 1.21259 1.20496 1.88803 1.41135 1.58529 1.40639 0.89056 0.94646 0.92030 0.94817 0.89922 0.93656 0.89857 0.93136 0.91588 0.87956 0.91402 0.91217 0.95501 0.94150 0.92672 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -16.03 10.07 -142.80 -1.44 -17.47 16 3 C 0.08 2.83 5.12 71.98 0.37 3.20 16 4 C 0.08 3.29 0.96 -10.13 -0.01 3.28 16 5 C -0.14 -4.98 8.71 71.98 0.63 -4.35 16 6 C -0.13 -4.44 6.05 32.05 0.19 -4.25 16 7 C -0.14 -5.48 5.69 31.85 0.18 -5.30 16 8 C 0.21 10.78 0.81 -11.07 -0.01 10.77 16 9 C -0.13 -6.81 8.52 71.98 0.61 -6.20 16 10 C -0.55 -30.74 8.23 25.60 0.21 -30.53 16 11 H 0.05 2.99 7.48 -2.91 -0.02 2.97 16 12 C 0.03 1.71 5.26 84.65 0.45 2.15 16 13 N -0.89 -54.06 10.93 21.45 0.23 -53.83 16 14 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 15 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 O -0.37 -19.74 9.47 -142.80 -1.35 -21.10 16 19 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 20 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.04 1.72 7.78 -2.39 -0.02 1.70 16 25 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.05 1.76 7.34 -2.39 -0.02 1.74 16 27 H 0.07 2.36 8.06 -2.38 -0.02 2.34 16 28 H 0.10 2.72 8.03 -2.39 -0.02 2.71 16 29 H 0.07 2.69 7.60 -2.38 -0.02 2.67 16 30 H 0.07 2.52 7.49 -2.39 -0.02 2.50 16 31 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 32 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.05 3.17 6.05 -2.39 -0.01 3.16 16 34 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -68.23 274.87 4.39 -63.84 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.05 Total: 10.89 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.87 Total: -29.23 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.23 Total: -53.83 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -2.79 Total: -38.57 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.23 4.39 -63.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306550808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.891 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds