Wall clock time and date at job start Mon Mar 30 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99657 * 2 1 4 4 C 1.53005 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.52994 * 110.27544 * 307.08713 * 4 3 2 6 6 C 1.54947 * 110.30777 * 184.99700 * 4 3 2 7 7 C 1.55312 * 100.94076 * 204.54248 * 6 4 3 8 8 C 1.54379 * 102.25161 * 34.13042 * 7 6 4 9 9 C 1.53000 * 109.83159 * 219.03770 * 8 7 6 10 10 C 1.50702 * 109.82773 * 98.15835 * 8 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.71939 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 O 1.43230 * 107.59211 * 338.64806 * 8 7 6 19 19 H 1.08999 * 109.46628 * 60.00316 * 1 2 3 20 20 H 1.09002 * 109.46900 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47327 * 300.00681 * 1 2 3 22 22 H 1.09003 * 109.47827 * 59.99410 * 3 2 1 23 23 H 1.09003 * 109.46928 * 299.99387 * 3 2 1 24 24 H 1.08998 * 109.47291 * 297.91250 * 5 4 3 25 25 H 1.09003 * 109.47071 * 57.90524 * 5 4 3 26 26 H 1.08995 * 109.47430 * 177.90677 * 5 4 3 27 27 H 1.08998 * 111.12888 * 86.62297 * 6 4 3 28 28 H 1.09000 * 111.12759 * 322.45783 * 6 4 3 29 29 H 1.09008 * 110.84490 * 275.94553 * 7 6 4 30 30 H 1.09001 * 111.02331 * 152.40209 * 7 6 4 31 31 H 1.08997 * 109.47262 * 299.81961 * 9 8 7 32 32 H 1.09001 * 109.47062 * 59.82225 * 9 8 7 33 33 H 1.08998 * 109.47014 * 179.81475 * 9 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9952 0.2803 1.1458 6 6 4.1858 2.5854 0.1272 7 6 5.5731 2.3260 -0.5210 8 6 5.2340 1.2951 -1.6190 9 6 6.3435 0.2451 -1.7056 10 6 5.0856 1.9925 -2.9467 11 1 5.2180 3.0623 -3.0125 12 6 4.7871 1.2638 -4.0785 13 7 4.6263 -0.0390 -3.9985 14 14 4.6107 2.1273 -5.7255 15 1 5.8845 2.8112 -6.0648 16 1 4.2896 1.1282 -6.7763 17 1 3.5173 3.1290 -5.6449 18 8 3.9973 0.6691 -1.2581 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.6885 1.8465 0.8899 23 1 1.6886 1.8463 -0.8901 24 1 3.7035 0.7232 2.0981 25 1 3.5301 -0.7002 1.0436 26 1 5.0794 0.1735 1.1117 27 1 4.2889 2.8777 1.1722 28 1 3.6235 3.3318 -0.4339 29 1 6.2680 1.9045 0.2055 30 1 5.9776 3.2391 -0.9577 31 1 7.2867 0.7326 -1.9521 32 1 6.4375 -0.2642 -0.7465 33 1 6.0967 -0.4812 -2.4799 34 1 4.4159 -0.5515 -4.7947 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306550809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:31 Heat of formation + Delta-G solvation = -95.464216 kcal Electronic energy + Delta-G solvation = -15608.892961 eV Core-core repulsion = 13121.003072 eV Total energy + Delta-G solvation = -2487.889889 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.92040 -36.93912 -33.27031 -31.20975 -30.77588 -27.78211 -26.89300 -25.20885 -25.03737 -22.30851 -19.68097 -18.93370 -16.66188 -15.77230 -15.48118 -14.97599 -14.51994 -14.22887 -13.49806 -13.05274 -12.64389 -12.44949 -12.03982 -11.62487 -11.52211 -11.24268 -11.09587 -10.85565 -10.79035 -10.60228 -10.41733 -10.32972 -10.00093 -9.70215 -9.35426 -9.20389 -8.97618 -8.40273 -7.76403 -5.86001 -4.02853 3.34996 3.40219 3.41899 4.27387 4.47907 4.93351 5.43333 5.47851 5.56726 5.61899 5.69146 5.80153 5.82759 5.92941 5.99217 6.09977 6.23256 6.37958 6.46469 6.60370 6.72784 6.78180 6.87462 7.02177 7.07702 7.22040 7.46826 7.67371 7.85612 8.19933 8.46619 8.75256 9.16436 9.67799 11.15372 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028458 B = 0.011826 C = 0.009901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.669832 B = 2367.169675 C = 2827.352374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.076 3.924 4 C 0.102 3.898 5 C -0.151 4.151 6 C -0.138 4.138 7 C -0.140 4.140 8 C 0.227 3.773 9 C -0.141 4.141 10 C -0.533 4.533 11 H 0.056 0.944 12 C 0.081 3.919 13 N -0.858 5.858 14 Si 0.886 3.114 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 O -0.333 6.333 19 H 0.037 0.963 20 H 0.079 0.921 21 H 0.032 0.968 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.011 0.989 33 H 0.090 0.910 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 2.502 8.066 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.001 4.001 4 C 0.061 3.939 5 C -0.209 4.209 6 C -0.176 4.176 7 C -0.178 4.178 8 C 0.190 3.810 9 C -0.198 4.198 10 C -0.571 4.571 11 H 0.074 0.926 12 C -0.124 4.124 13 N -0.494 5.494 14 Si 0.713 3.287 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 O -0.252 6.252 19 H 0.056 0.944 20 H 0.098 0.902 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.109 0.891 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.831 1.998 7.829 8.942 hybrid contribution -0.287 0.905 -0.801 1.242 sum -4.118 2.903 7.027 8.647 Atomic orbital electron populations 1.22660 0.82541 1.02051 0.99219 1.87983 1.18236 1.27997 1.95164 1.22655 0.93664 0.84450 0.99283 1.22060 0.90883 0.92357 0.88645 1.22089 1.01198 1.00893 0.96694 1.23105 0.97827 0.96998 0.99655 1.23186 0.95267 1.00999 0.98322 1.19633 0.82084 0.87964 0.91360 1.22021 0.97104 1.00851 0.99846 1.21186 1.50636 0.93483 0.91763 0.92562 1.24997 0.94082 0.94721 0.98628 1.69957 1.45490 1.05351 1.28577 0.86792 0.78510 0.79445 0.83913 1.20296 1.21274 1.20335 1.88865 1.40288 1.64090 1.31970 0.94406 0.90211 0.94992 0.93870 0.92757 0.93638 0.91698 0.92750 0.92096 0.91061 0.93024 0.91398 0.94746 0.96970 0.89137 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -7.39 9.77 -35.38 -0.35 -7.73 16 3 C 0.08 1.45 5.19 37.16 0.19 1.64 16 4 C 0.10 2.13 1.00 -89.59 -0.09 2.04 16 5 C -0.15 -2.83 8.64 37.15 0.32 -2.51 16 6 C -0.14 -2.62 6.05 -24.48 -0.15 -2.77 16 7 C -0.14 -2.96 5.69 -24.78 -0.14 -3.10 16 8 C 0.23 5.80 0.82 -91.05 -0.07 5.73 16 9 C -0.14 -3.54 8.52 37.16 0.32 -3.22 16 10 C -0.53 -14.86 8.23 -34.44 -0.28 -15.15 16 11 H 0.06 1.53 7.49 -52.49 -0.39 1.14 16 12 C 0.08 2.29 5.26 -17.82 -0.09 2.20 16 13 N -0.86 -25.29 10.91 55.43 0.60 -24.69 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 O -0.33 -8.81 9.58 -35.38 -0.34 -9.15 16 19 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 20 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 21 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.28 7.50 -51.93 -0.39 0.89 16 26 H 0.05 1.02 7.31 -51.93 -0.38 0.64 16 27 H 0.06 0.96 8.03 -51.93 -0.42 0.55 16 28 H 0.07 1.35 8.06 -51.93 -0.42 0.94 16 29 H 0.05 1.00 7.53 -51.92 -0.39 0.61 16 30 H 0.07 1.40 7.61 -51.93 -0.40 1.01 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.01 0.27 7.93 -51.93 -0.41 -0.15 16 33 H 0.09 2.53 6.00 -51.93 -0.31 2.22 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -30.97 274.28 -5.45 -36.42 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.60 Total: -1.94 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 1.11 Total: -13.56 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.60 Total: -24.69 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.68 Total: -16.88 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.97 -5.45 -36.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306550809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.039 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds