Wall clock time and date at job start Mon Mar 30 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99657 * 2 1 4 4 C 1.53005 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.52994 * 110.27544 * 307.08713 * 4 3 2 6 6 C 1.54947 * 110.30777 * 184.99700 * 4 3 2 7 7 C 1.55312 * 100.94076 * 204.54248 * 6 4 3 8 8 C 1.54379 * 102.25161 * 34.13042 * 7 6 4 9 9 C 1.53000 * 109.83159 * 219.03770 * 8 7 6 10 10 C 1.50702 * 109.82773 * 98.15835 * 8 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.71939 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 O 1.43230 * 107.59211 * 338.64806 * 8 7 6 19 19 H 1.08999 * 109.46628 * 60.00316 * 1 2 3 20 20 H 1.09002 * 109.46900 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47327 * 300.00681 * 1 2 3 22 22 H 1.09003 * 109.47827 * 59.99410 * 3 2 1 23 23 H 1.09003 * 109.46928 * 299.99387 * 3 2 1 24 24 H 1.08998 * 109.47291 * 297.91250 * 5 4 3 25 25 H 1.09003 * 109.47071 * 57.90524 * 5 4 3 26 26 H 1.08995 * 109.47430 * 177.90677 * 5 4 3 27 27 H 1.08998 * 111.12888 * 86.62297 * 6 4 3 28 28 H 1.09000 * 111.12759 * 322.45783 * 6 4 3 29 29 H 1.09008 * 110.84490 * 275.94553 * 7 6 4 30 30 H 1.09001 * 111.02331 * 152.40209 * 7 6 4 31 31 H 1.08997 * 109.47262 * 299.81961 * 9 8 7 32 32 H 1.09001 * 109.47062 * 59.82225 * 9 8 7 33 33 H 1.08998 * 109.47014 * 179.81475 * 9 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9952 0.2803 1.1458 6 6 4.1858 2.5854 0.1272 7 6 5.5731 2.3260 -0.5210 8 6 5.2340 1.2951 -1.6190 9 6 6.3435 0.2451 -1.7056 10 6 5.0856 1.9925 -2.9467 11 1 5.2180 3.0623 -3.0125 12 6 4.7871 1.2638 -4.0785 13 7 4.6263 -0.0390 -3.9985 14 14 4.6107 2.1273 -5.7255 15 1 5.8845 2.8112 -6.0648 16 1 4.2896 1.1282 -6.7763 17 1 3.5173 3.1290 -5.6449 18 8 3.9973 0.6691 -1.2581 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.6885 1.8465 0.8899 23 1 1.6886 1.8463 -0.8901 24 1 3.7035 0.7232 2.0981 25 1 3.5301 -0.7002 1.0436 26 1 5.0794 0.1735 1.1117 27 1 4.2889 2.8777 1.1722 28 1 3.6235 3.3318 -0.4339 29 1 6.2680 1.9045 0.2055 30 1 5.9776 3.2391 -0.9577 31 1 7.2867 0.7326 -1.9521 32 1 6.4375 -0.2642 -0.7465 33 1 6.0967 -0.4812 -2.4799 34 1 4.4159 -0.5515 -4.7947 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306550809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:31 Heat of formation + Delta-G solvation = -115.892076 kcal Electronic energy + Delta-G solvation = -15609.778780 eV Core-core repulsion = 13121.003072 eV Total energy + Delta-G solvation = -2488.775707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.59145 -38.40375 -35.19207 -32.99868 -32.60718 -29.47902 -28.25125 -27.14242 -26.58062 -23.94696 -21.47033 -20.62290 -18.62712 -17.16543 -16.95155 -16.68441 -16.31798 -15.82752 -15.21327 -14.77886 -14.23306 -14.17442 -13.52232 -13.24111 -13.13922 -12.95967 -12.79500 -12.71812 -12.45906 -12.25281 -12.15906 -12.04955 -11.88922 -11.33395 -11.09113 -10.87091 -10.53384 -10.50624 -9.66161 -7.97176 -6.20861 1.41143 1.42323 1.49656 2.45002 2.94547 3.13274 3.56365 3.93736 4.15609 4.20513 4.34330 4.42627 4.55389 4.58712 4.61138 4.75774 4.81739 4.83546 4.91560 4.94827 5.11202 5.11449 5.16812 5.23869 5.40097 5.53459 5.60413 5.71753 6.16006 6.35371 6.40657 6.74360 7.25980 7.55786 9.02638 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028458 B = 0.011826 C = 0.009901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.669832 B = 2367.169675 C = 2827.352374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.078 3.922 4 C 0.083 3.917 5 C -0.142 4.142 6 C -0.127 4.127 7 C -0.136 4.136 8 C 0.212 3.788 9 C -0.135 4.135 10 C -0.548 4.548 11 H 0.055 0.945 12 C 0.030 3.970 13 N -0.890 5.890 14 Si 0.947 3.053 15 H -0.267 1.267 16 H -0.287 1.287 17 H -0.274 1.274 18 O -0.374 6.374 19 H 0.034 0.966 20 H 0.093 0.907 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.032 0.968 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.025 0.975 33 H 0.056 0.944 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 3.823 9.536 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.002 3.998 4 C 0.043 3.957 5 C -0.199 4.199 6 C -0.165 4.165 7 C -0.174 4.174 8 C 0.175 3.825 9 C -0.193 4.193 10 C -0.586 4.586 11 H 0.073 0.927 12 C -0.172 4.172 13 N -0.528 5.528 14 Si 0.772 3.228 15 H -0.192 1.192 16 H -0.213 1.213 17 H -0.200 1.200 18 O -0.294 6.294 19 H 0.053 0.947 20 H 0.112 0.888 21 H 0.079 0.921 22 H 0.101 0.899 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.285 3.334 9.308 10.776 hybrid contribution -0.186 0.470 -1.204 1.306 sum -4.472 3.803 8.104 10.007 Atomic orbital electron populations 1.22892 0.80174 1.03481 1.00475 1.87933 1.20952 1.28531 1.95412 1.22641 0.92595 0.84504 1.00084 1.22498 0.92301 0.93661 0.87277 1.21989 1.00572 0.99844 0.97536 1.23077 0.95840 0.95709 1.01828 1.23093 0.97036 0.99727 0.97506 1.19711 0.82016 0.88787 0.92006 1.21921 0.97563 1.00420 0.99350 1.21612 1.49968 0.93592 0.93456 0.92702 1.25754 0.94060 0.95300 1.02089 1.70130 1.46841 1.06706 1.29098 0.85821 0.78768 0.78344 0.79837 1.19239 1.21268 1.19963 1.88782 1.40608 1.65052 1.34984 0.94691 0.88843 0.92072 0.89890 0.94932 0.89964 0.93485 0.93307 0.87972 0.91538 0.91279 0.91323 0.94169 0.95551 0.92523 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -15.66 9.77 -148.84 -1.45 -17.12 16 3 C 0.08 2.85 5.19 71.98 0.37 3.22 16 4 C 0.08 3.33 1.00 -10.13 -0.01 3.32 16 5 C -0.14 -4.99 8.64 71.98 0.62 -4.36 16 6 C -0.13 -4.45 6.05 32.05 0.19 -4.26 16 7 C -0.14 -5.48 5.69 31.86 0.18 -5.30 16 8 C 0.21 10.84 0.82 -11.07 -0.01 10.83 16 9 C -0.13 -6.86 8.52 71.98 0.61 -6.24 16 10 C -0.55 -30.79 8.23 25.60 0.21 -30.58 16 11 H 0.05 2.99 7.49 -2.91 -0.02 2.97 16 12 C 0.03 1.71 5.26 84.66 0.45 2.15 16 13 N -0.89 -53.98 10.91 21.45 0.23 -53.75 16 14 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 18 O -0.37 -19.92 9.58 -148.84 -1.43 -21.34 16 19 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 21 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.05 1.79 7.50 -2.39 -0.02 1.78 16 26 H 0.05 1.73 7.31 -2.39 -0.02 1.71 16 27 H 0.10 2.73 8.03 -2.39 -0.02 2.71 16 28 H 0.07 2.37 8.06 -2.39 -0.02 2.36 16 29 H 0.07 2.50 7.53 -2.38 -0.02 2.49 16 30 H 0.07 2.71 7.61 -2.39 -0.02 2.69 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.03 1.20 7.93 -2.39 -0.02 1.18 16 33 H 0.06 3.26 6.00 -2.39 -0.01 3.25 16 34 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -67.73 274.28 4.30 -63.43 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.05 Total: 11.32 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 3.87 Total: -29.27 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.23 Total: -53.75 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -2.88 Total: -38.46 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.73 4.30 -63.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306550809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.466 kcal (2) G-P(sol) polarization free energy of solvation -67.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds