Wall clock time and date at job start Mon Mar 30 2020 02:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99912 * 2 1 4 4 C 1.34775 * 120.00357 * 179.97438 * 2 1 3 5 5 O 1.21592 * 119.99710 * 2.85050 * 4 2 1 6 6 N 1.34772 * 120.00286 * 182.84118 * 4 2 1 7 7 C 1.47583 * 134.49204 * 183.33269 * 6 4 2 8 8 C 1.53943 * 86.11651 * 155.36294 * 7 6 4 9 9 O 1.42904 * 113.73768 * 269.15285 * 8 7 6 10 10 C 1.50695 * 113.74535 * 137.95138 * 8 7 6 11 11 H 1.08008 * 119.99960 * 5.40200 * 10 8 7 12 12 C 1.37882 * 120.00288 * 185.39934 * 10 8 7 13 13 N 1.31514 * 119.99815 * 15.23834 * 12 10 8 14 14 Si 1.86801 * 119.99969 * 195.23197 * 12 10 8 15 15 H 1.48505 * 109.46927 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.47419 * 300.00171 * 14 12 10 17 17 H 1.48500 * 109.47096 * 60.00492 * 14 12 10 18 18 C 1.47578 * 134.49283 * 3.33256 * 6 4 2 19 19 H 1.09004 * 109.47577 * 240.00341 * 1 2 3 20 20 H 1.09001 * 109.47625 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47123 * 120.00020 * 1 2 3 22 22 H 1.08999 * 109.47132 * 263.92797 * 3 2 1 23 23 H 1.08998 * 109.47055 * 23.92876 * 3 2 1 24 24 H 1.08997 * 109.47442 * 143.92614 * 3 2 1 25 25 H 1.08992 * 113.77396 * 41.05908 * 7 6 4 26 26 H 1.09000 * 113.86609 * 269.67112 * 7 6 4 27 27 H 0.96707 * 113.99988 * 172.54233 * 9 8 7 28 28 H 0.97005 * 119.99595 * 355.92067 * 13 12 10 29 29 H 1.08997 * 113.76975 * 90.33761 * 18 6 4 30 30 H 1.09005 * 113.77060 * 318.94113 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5321 -2.2195 -0.0514 6 7 3.4854 -1.1678 0.0584 7 6 4.5219 -2.2175 0.0161 8 6 5.4681 -1.1160 -0.4951 9 8 5.4995 -0.9999 -1.9191 10 6 6.8425 -1.1627 0.1210 11 1 7.1106 -1.9734 0.7825 12 6 7.7580 -0.1706 -0.1597 13 7 7.3589 0.9564 -0.7076 14 14 9.5649 -0.4273 0.2384 15 1 10.3351 0.7793 -0.1570 16 1 9.7226 -0.6586 1.6968 17 1 10.0736 -1.6062 -0.5077 18 6 4.5155 -0.1192 0.1895 19 1 -0.3634 -0.5138 0.8900 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3633 -0.5138 -0.8900 22 1 2.4732 1.5291 -1.0219 23 1 1.5656 2.0531 0.4168 24 1 3.0984 1.1682 0.6051 25 1 4.3241 -3.0011 -0.7153 26 1 4.7930 -2.6094 0.9964 27 1 6.0020 -0.2388 -2.2407 28 1 6.4312 1.0670 -0.9686 29 1 4.7836 0.1067 1.2215 30 1 4.3125 0.7726 -0.4035 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306644234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:53 Heat of formation + Delta-G solvation = -22.956543 kcal Electronic energy + Delta-G solvation = -15031.588260 eV Core-core repulsion = 12443.302196 eV Total energy + Delta-G solvation = -2588.286064 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.02409 -37.88850 -35.08495 -34.29706 -32.37970 -29.05315 -27.78419 -25.83707 -25.19561 -24.00775 -20.15472 -18.92073 -18.06244 -16.41200 -16.13742 -15.68420 -15.00542 -14.28664 -13.98926 -13.83302 -13.38055 -12.74962 -12.65481 -12.60798 -12.30414 -11.95218 -11.74566 -11.38622 -11.08386 -10.92397 -10.50268 -10.22646 -9.74644 -9.22179 -8.87120 -8.52733 -8.27906 -7.71902 -6.71576 -4.47703 2.97615 3.29990 3.34859 3.51947 3.68230 4.12433 4.31186 4.83637 5.17335 5.25249 5.36842 5.49846 5.68593 5.78420 5.86877 5.89866 6.05975 6.14857 6.27654 6.39868 6.43201 6.76842 6.82758 7.50714 7.65770 8.09690 8.44413 8.60003 8.83664 9.05566 9.22821 10.61705 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.056323 B = 0.008577 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.016099 B = 3263.686731 C = 3492.814793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.640 5.640 3 C 0.070 3.930 4 C 0.724 3.276 5 O -0.607 6.607 6 N -0.653 5.653 7 C 0.144 3.856 8 C 0.214 3.786 9 O -0.565 6.565 10 C -0.618 4.618 11 H 0.065 0.935 12 C 0.034 3.966 13 N -0.896 5.896 14 Si 1.071 2.929 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.068 3.932 19 H 0.053 0.947 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.372 0.628 28 H 0.266 0.734 29 H 0.083 0.917 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 2.944 1.987 6.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.379 5.379 3 C -0.074 4.074 4 C 0.428 3.572 5 O -0.487 6.487 6 N -0.391 5.391 7 C 0.021 3.979 8 C 0.173 3.827 9 O -0.372 6.372 10 C -0.656 4.656 11 H 0.084 0.916 12 C -0.172 4.172 13 N -0.532 5.532 14 Si 0.898 3.102 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.055 4.055 19 H 0.072 0.928 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.221 0.779 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.286 2.579 1.957 6.199 hybrid contribution -1.325 -0.039 0.074 1.327 sum -6.611 2.541 2.032 7.368 Atomic orbital electron populations 1.21382 0.78513 1.01316 1.01812 1.46810 1.06373 1.05092 1.79626 1.22304 0.98031 0.85133 1.01887 1.15452 0.80509 0.83368 0.77829 1.90838 1.67393 1.30456 1.60017 1.49262 1.01708 1.12813 1.75306 1.23144 0.82046 0.92595 1.00103 1.20188 0.92733 0.90317 0.79438 1.86279 1.76715 1.52359 1.21884 1.22233 0.97383 1.13579 1.32414 0.91632 1.26002 1.05969 0.91540 0.93688 1.70993 1.19608 1.23120 1.39498 0.83499 0.73991 0.76219 0.76492 1.20596 1.21161 1.20977 1.24561 0.85736 0.93773 1.01442 0.92795 0.91171 0.92678 0.93018 0.91609 0.89814 0.91178 0.89621 0.77874 0.92189 0.89871 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.57 10.16 59.84 0.61 2.18 16 2 N -0.64 -11.26 3.27 -195.34 -0.64 -11.90 16 3 C 0.07 1.02 9.10 59.85 0.54 1.57 16 4 C 0.72 15.92 8.51 -86.92 -0.74 15.18 16 5 O -0.61 -15.09 17.08 5.28 0.09 -15.00 16 6 N -0.65 -14.34 3.59 -184.09 -0.66 -15.00 16 7 C 0.14 3.23 8.23 -2.97 -0.02 3.20 16 8 C 0.21 5.09 1.08 -90.85 -0.10 4.99 16 9 O -0.57 -13.96 13.46 -35.23 -0.47 -14.43 16 10 C -0.62 -15.66 8.55 -34.44 -0.29 -15.95 16 11 H 0.07 1.65 7.86 -52.48 -0.41 1.24 16 12 C 0.03 0.86 5.23 -17.82 -0.09 0.76 16 13 N -0.90 -23.23 13.07 55.43 0.72 -22.50 16 14 Si 1.07 22.63 29.93 -169.99 -5.09 17.54 16 15 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 C 0.07 1.43 4.68 -2.98 -0.01 1.42 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 20 H 0.07 0.72 7.72 -51.93 -0.40 0.31 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 23 H 0.07 0.74 7.80 -51.93 -0.40 0.34 16 24 H 0.08 1.33 4.57 -51.93 -0.24 1.09 16 25 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 26 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 27 H 0.37 8.87 6.90 45.56 0.31 9.18 16 28 H 0.27 6.68 5.29 -40.82 -0.22 6.47 16 29 H 0.08 1.75 8.08 -51.93 -0.42 1.33 16 30 H 0.07 1.43 5.55 -51.93 -0.29 1.14 16 LS Contribution 251.41 15.07 3.79 3.79 Total: -1.00 -30.55 251.41 -5.33 -35.88 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -2.96 Total: 8.28 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -0.11 Total: 13.36 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.58 Total: -49.41 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.38 Total: -29.43 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.09 Total: 17.54 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.55 -5.33 -35.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306644234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.923 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds