Wall clock time and date at job start Mon Mar 30 2020 02:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99912 * 2 1 4 4 C 1.34775 * 120.00357 * 179.97438 * 2 1 3 5 5 O 1.21592 * 119.99710 * 2.85050 * 4 2 1 6 6 N 1.34772 * 120.00286 * 182.84118 * 4 2 1 7 7 C 1.47583 * 134.49204 * 183.33269 * 6 4 2 8 8 C 1.53943 * 86.11651 * 155.36294 * 7 6 4 9 9 O 1.42904 * 113.73768 * 269.15285 * 8 7 6 10 10 C 1.50695 * 113.74535 * 137.95138 * 8 7 6 11 11 H 1.08008 * 119.99960 * 5.40200 * 10 8 7 12 12 C 1.37882 * 120.00288 * 185.39934 * 10 8 7 13 13 N 1.31514 * 119.99815 * 15.23834 * 12 10 8 14 14 Si 1.86801 * 119.99969 * 195.23197 * 12 10 8 15 15 H 1.48505 * 109.46927 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.47419 * 300.00171 * 14 12 10 17 17 H 1.48500 * 109.47096 * 60.00492 * 14 12 10 18 18 C 1.47578 * 134.49283 * 3.33256 * 6 4 2 19 19 H 1.09004 * 109.47577 * 240.00341 * 1 2 3 20 20 H 1.09001 * 109.47625 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47123 * 120.00020 * 1 2 3 22 22 H 1.08999 * 109.47132 * 263.92797 * 3 2 1 23 23 H 1.08998 * 109.47055 * 23.92876 * 3 2 1 24 24 H 1.08997 * 109.47442 * 143.92614 * 3 2 1 25 25 H 1.08992 * 113.77396 * 41.05908 * 7 6 4 26 26 H 1.09000 * 113.86609 * 269.67112 * 7 6 4 27 27 H 0.96707 * 113.99988 * 172.54233 * 9 8 7 28 28 H 0.97005 * 119.99595 * 355.92067 * 13 12 10 29 29 H 1.08997 * 113.76975 * 90.33761 * 18 6 4 30 30 H 1.09005 * 113.77060 * 318.94113 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5321 -2.2195 -0.0514 6 7 3.4854 -1.1678 0.0584 7 6 4.5219 -2.2175 0.0161 8 6 5.4681 -1.1160 -0.4951 9 8 5.4995 -0.9999 -1.9191 10 6 6.8425 -1.1627 0.1210 11 1 7.1106 -1.9734 0.7825 12 6 7.7580 -0.1706 -0.1597 13 7 7.3589 0.9564 -0.7076 14 14 9.5649 -0.4273 0.2384 15 1 10.3351 0.7793 -0.1570 16 1 9.7226 -0.6586 1.6968 17 1 10.0736 -1.6062 -0.5077 18 6 4.5155 -0.1192 0.1895 19 1 -0.3634 -0.5138 0.8900 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3633 -0.5138 -0.8900 22 1 2.4732 1.5291 -1.0219 23 1 1.5656 2.0531 0.4168 24 1 3.0984 1.1682 0.6051 25 1 4.3241 -3.0011 -0.7153 26 1 4.7930 -2.6094 0.9964 27 1 6.0020 -0.2388 -2.2407 28 1 6.4312 1.0670 -0.9686 29 1 4.7836 0.1067 1.2215 30 1 4.3125 0.7726 -0.4035 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306644234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:52 Heat of formation + Delta-G solvation = -45.985931 kcal Electronic energy + Delta-G solvation = -15032.586889 eV Core-core repulsion = 12443.302196 eV Total energy + Delta-G solvation = -2589.284693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.71286 -39.61290 -36.60510 -36.14699 -34.31747 -30.65801 -29.16204 -27.51564 -26.85965 -25.61529 -21.93101 -20.58070 -19.90278 -18.03747 -17.77906 -17.25906 -16.76510 -16.02421 -15.66541 -15.37784 -15.00263 -14.34968 -14.31995 -14.01337 -13.64569 -13.55703 -13.23860 -13.00049 -12.77671 -12.56679 -12.27594 -11.88725 -11.51988 -11.03451 -10.75308 -10.19790 -10.00168 -9.35059 -8.68487 -6.46490 1.45143 1.62670 1.67526 1.88169 1.99386 2.54282 2.63796 2.95615 3.45084 3.86941 4.10213 4.19846 4.35151 4.37416 4.41692 4.54456 4.60710 4.65974 4.71207 4.78573 4.83771 4.97211 5.53025 5.73919 5.97204 6.10919 6.48126 6.91041 6.96142 7.29181 7.39178 8.66161 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.056323 B = 0.008577 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.016099 B = 3263.686731 C = 3492.814793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.636 5.636 3 C 0.066 3.934 4 C 0.712 3.288 5 O -0.644 6.644 6 N -0.656 5.656 7 C 0.141 3.859 8 C 0.198 3.802 9 O -0.576 6.576 10 C -0.635 4.635 11 H 0.061 0.939 12 C -0.002 4.002 13 N -0.910 5.910 14 Si 1.114 2.886 15 H -0.283 1.283 16 H -0.271 1.271 17 H -0.278 1.278 18 C 0.088 3.912 19 H 0.052 0.948 20 H 0.115 0.885 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.109 0.891 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.373 0.627 28 H 0.264 0.736 29 H 0.085 0.915 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 4.131 2.507 7.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.374 5.374 3 C -0.076 4.076 4 C 0.416 3.584 5 O -0.528 6.528 6 N -0.394 5.394 7 C 0.018 3.982 8 C 0.157 3.843 9 O -0.383 6.383 10 C -0.673 4.673 11 H 0.079 0.921 12 C -0.204 4.204 13 N -0.547 5.547 14 Si 0.936 3.064 15 H -0.208 1.208 16 H -0.197 1.197 17 H -0.204 1.204 18 C -0.034 4.034 19 H 0.070 0.930 20 H 0.134 0.866 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.127 0.873 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.222 0.778 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.551 3.802 2.482 7.172 hybrid contribution -1.313 -0.398 -0.108 1.376 sum -6.863 3.404 2.375 8.021 Atomic orbital electron populations 1.21655 0.76258 1.04177 1.01375 1.46992 1.07832 1.04581 1.77945 1.22436 0.98352 0.84777 1.02017 1.15783 0.80379 0.84324 0.77925 1.90799 1.67989 1.32237 1.61729 1.49232 1.02020 1.12628 1.75534 1.23151 0.82333 0.92376 1.00389 1.20371 0.92914 0.92006 0.79013 1.86263 1.76768 1.52605 1.22698 1.22444 0.98507 1.13597 1.32716 0.92113 1.27095 1.09036 0.91088 0.93169 1.71059 1.19665 1.23699 1.40325 0.82932 0.70199 0.76094 0.77177 1.20807 1.19663 1.20370 1.24337 0.84357 0.93449 1.01284 0.92952 0.86629 0.93477 0.92987 0.87288 0.91153 0.92231 0.88456 0.77778 0.92473 0.89677 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.71 10.16 127.77 1.30 4.00 16 2 N -0.64 -21.07 3.27 -890.19 -2.91 -23.99 16 3 C 0.07 1.75 9.10 127.77 1.16 2.91 16 4 C 0.71 30.84 8.51 179.06 1.52 32.36 16 5 O -0.64 -32.12 17.08 -4.01 -0.07 -32.19 16 6 N -0.66 -28.53 3.59 -858.43 -3.08 -31.61 16 7 C 0.14 6.34 8.23 86.48 0.71 7.05 16 8 C 0.20 9.35 1.08 -10.88 -0.01 9.34 16 9 O -0.58 -28.49 13.46 -148.98 -2.01 -30.50 16 10 C -0.63 -31.90 8.55 25.60 0.22 -31.68 16 11 H 0.06 3.04 7.86 -2.91 -0.02 3.02 16 12 C 0.00 -0.09 5.23 84.66 0.44 0.36 16 13 N -0.91 -46.49 13.07 21.45 0.28 -46.21 16 14 Si 1.11 44.60 29.93 68.60 2.05 46.66 16 15 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 18 C 0.09 3.66 4.68 86.48 0.40 4.06 16 19 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 20 H 0.12 1.84 7.72 -2.39 -0.02 1.83 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.05 1.39 7.88 -2.39 -0.02 1.37 16 23 H 0.11 1.96 7.80 -2.39 -0.02 1.94 16 24 H 0.07 2.07 4.57 -2.39 -0.01 2.06 16 25 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.10 4.09 8.09 -2.39 -0.02 4.07 16 27 H 0.37 17.84 6.90 -74.05 -0.51 17.33 16 28 H 0.26 13.10 5.29 -92.70 -0.49 12.61 16 29 H 0.09 3.49 8.08 -2.39 -0.02 3.47 16 30 H 0.08 3.24 5.55 -2.38 -0.01 3.23 16 Total: -1.00 -64.34 251.41 0.94 -63.40 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.92 Total: 26.02 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 5.75 Total: 28.41 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -5.72 Total: -101.81 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -2.07 Total: -62.68 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.05 Total: 46.66 kcal Total: -64.34 0.94 -63.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306644234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.415 kcal (2) G-P(sol) polarization free energy of solvation -64.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds