Wall clock time and date at job start Mon Mar 30 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00177 * 2 1 4 4 C 1.53002 * 109.46887 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.48230 * 60.02270 * 4 3 2 6 6 C 1.53097 * 109.48837 * 180.02562 * 4 3 2 7 7 C 1.53178 * 109.16320 * 62.37753 * 6 4 3 8 8 C 1.53207 * 109.03992 * 56.98185 * 7 6 4 9 9 C 1.53092 * 109.14859 * 303.02293 * 8 7 6 10 10 H 1.09002 * 109.48343 * 297.61643 * 9 8 7 11 11 C 1.50700 * 109.47775 * 177.59222 * 9 8 7 12 12 H 1.07995 * 120.00137 * 0.02830 * 11 9 8 13 13 C 1.37881 * 120.00061 * 180.02562 * 11 9 8 14 14 N 1.31522 * 119.99559 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 120.00039 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47402 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47246 * 120.00037 * 15 13 11 18 18 H 1.48505 * 109.47276 * 240.00054 * 15 13 11 19 19 O 1.42898 * 109.47979 * 299.99739 * 4 3 2 20 20 H 1.09000 * 109.47883 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47059 * 300.00351 * 1 2 3 22 22 H 1.09007 * 109.47050 * 59.99726 * 1 2 3 23 23 H 1.09001 * 109.47271 * 59.99800 * 3 2 1 24 24 H 1.09008 * 109.47095 * 299.99932 * 3 2 1 25 25 H 1.09000 * 109.46667 * 299.97869 * 5 4 3 26 26 H 1.08997 * 109.46773 * 59.97284 * 5 4 3 27 27 H 1.09001 * 109.46814 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.51867 * 182.28617 * 6 4 3 29 29 H 1.09005 * 109.52093 * 302.40602 * 6 4 3 30 30 H 1.09004 * 109.54044 * 176.84782 * 7 6 4 31 31 H 1.09000 * 109.54126 * 297.02411 * 7 6 4 32 32 H 1.08999 * 109.53319 * 183.11811 * 8 7 6 33 33 H 1.08992 * 109.51748 * 62.92028 * 8 7 6 34 34 H 0.97001 * 119.99277 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 3.9867 0.4259 -1.2504 6 6 4.1587 2.5828 0.0000 7 6 3.7511 3.3144 1.2826 8 6 4.1881 2.4826 2.4928 9 6 3.5636 1.0882 2.3955 10 1 2.4774 1.1732 2.4274 11 6 4.0359 0.2445 3.5514 12 1 4.7130 0.6606 4.2826 13 6 3.6034 -1.0589 3.6756 14 7 2.7791 -1.5658 2.7849 15 14 4.1882 -2.1045 5.1087 16 1 5.1038 -1.3061 5.9628 17 1 3.0183 -2.5430 5.9113 18 1 4.9080 -3.2958 4.5911 19 8 3.9578 0.4751 1.1658 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6886 1.8463 -0.8901 25 1 3.5437 -0.5700 -1.2506 26 1 3.6645 0.9671 -2.1400 27 1 5.0734 0.3403 -1.2509 28 1 5.2446 2.4976 -0.0414 29 1 3.8038 3.1402 -0.8669 30 1 4.2367 4.2897 1.3160 31 1 2.6691 3.4450 1.2997 32 1 3.8531 2.9686 3.4091 33 1 5.2744 2.3955 2.5016 34 1 2.4752 -2.4828 2.8720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307000081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:51 Heat of formation + Delta-G solvation = -100.508600 kcal Electronic energy + Delta-G solvation = -15773.806157 eV Core-core repulsion = 13285.697527 eV Total energy + Delta-G solvation = -2488.108630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97428 -36.37071 -33.18271 -32.38954 -31.35196 -27.56427 -26.76027 -25.20096 -24.52824 -22.00447 -20.59537 -18.27169 -16.49988 -15.84345 -15.50569 -14.56093 -14.55212 -14.23181 -13.76518 -13.41900 -12.73559 -12.70006 -12.13810 -11.90941 -11.58478 -11.25102 -11.09304 -10.87725 -10.82192 -10.58776 -10.43400 -10.28296 -10.18875 -9.71261 -9.37399 -8.82688 -8.67977 -8.34439 -7.69450 -5.83593 -3.98667 3.36636 3.44748 3.48139 4.46870 4.52397 5.13474 5.40281 5.54078 5.60411 5.69607 5.73332 5.82018 5.89764 5.94679 6.06676 6.08060 6.22354 6.28896 6.37033 6.41749 6.43721 6.63750 6.80449 6.85005 6.89942 7.00485 7.10287 7.63861 7.98542 8.02051 8.41404 8.91332 9.28401 9.70209 11.20356 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.012739 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.612420 B = 2197.418579 C = 2714.213175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.348 6.348 3 C 0.046 3.954 4 C 0.111 3.889 5 C -0.128 4.128 6 C -0.137 4.137 7 C -0.123 4.123 8 C -0.146 4.146 9 C 0.219 3.781 10 H 0.016 0.984 11 C -0.533 4.533 12 H 0.061 0.939 13 C 0.079 3.921 14 N -0.838 5.838 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 O -0.335 6.335 20 H 0.078 0.922 21 H 0.033 0.967 22 H 0.023 0.977 23 H 0.049 0.951 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 6.252 -6.195 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C -0.032 4.032 4 C 0.070 3.930 5 C -0.186 4.186 6 C -0.175 4.175 7 C -0.161 4.161 8 C -0.184 4.184 9 C 0.163 3.837 10 H 0.033 0.967 11 C -0.570 4.570 12 H 0.079 0.921 13 C -0.128 4.128 14 N -0.473 5.473 15 Si 0.712 3.288 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 O -0.254 6.254 20 H 0.097 0.903 21 H 0.052 0.948 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.929 5.749 -6.260 8.716 hybrid contribution -0.139 -0.043 0.749 0.763 sum -2.068 5.707 -5.510 8.198 Atomic orbital electron populations 1.22587 0.83243 1.01860 0.98311 1.88140 1.17404 1.26195 1.94826 1.23090 0.95917 0.85556 0.98593 1.21218 0.89957 0.91230 0.90633 1.21602 1.00993 1.01351 0.94605 1.22131 1.01323 0.96678 0.97378 1.21687 1.00273 0.98096 0.96035 1.22301 1.01136 0.99136 0.95813 1.19690 0.93884 0.87304 0.82782 0.96685 1.20966 1.30872 0.98088 1.07070 0.92098 1.25079 0.94402 0.97837 0.95462 1.70146 1.30156 1.14162 1.32854 0.86681 0.78610 0.80687 0.82805 1.19815 1.21123 1.20976 1.88449 1.76332 1.48935 1.11667 0.90332 0.94841 0.95829 0.93259 0.95177 0.91239 0.93238 0.92810 0.91276 0.92656 0.93183 0.92744 0.92645 0.92534 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.01 101.05 1.11 1.77 16 2 O -0.35 -7.72 9.92 -44.84 -0.44 -8.17 16 3 C 0.05 0.92 4.15 37.16 0.15 1.08 16 4 C 0.11 2.32 0.88 -90.57 -0.08 2.24 16 5 C -0.13 -2.41 8.70 37.16 0.32 -2.08 16 6 C -0.14 -2.43 4.92 -26.59 -0.13 -2.56 16 7 C -0.12 -2.22 5.72 -26.53 -0.15 -2.37 16 8 C -0.15 -3.16 5.36 -26.58 -0.14 -3.31 16 9 C 0.22 5.74 2.17 -27.84 -0.06 5.68 16 10 H 0.02 0.44 6.34 -51.93 -0.33 0.11 16 11 C -0.53 -15.32 8.79 -34.44 -0.30 -15.62 16 12 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 13 C 0.08 2.29 5.40 -17.82 -0.10 2.20 16 14 N -0.84 -25.06 12.84 55.43 0.71 -24.35 16 15 Si 0.88 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 O -0.33 -8.84 9.16 -44.84 -0.41 -9.25 16 20 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 21 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 1.04 4.98 -51.93 -0.26 0.78 16 24 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.07 1.43 7.68 -51.93 -0.40 1.03 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.95 6.62 -51.93 -0.34 0.61 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -31.41 271.13 -5.98 -37.39 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -5.52 Total: -3.49 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 0.63 Total: -12.98 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.71 Total: -24.35 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.86 Total: -17.42 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.41 -5.98 -37.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307000081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.123 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds