Wall clock time and date at job start Mon Mar 30 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00177 * 2 1 4 4 C 1.53002 * 109.46887 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.48230 * 60.02270 * 4 3 2 6 6 C 1.53097 * 109.48837 * 180.02562 * 4 3 2 7 7 C 1.53178 * 109.16320 * 62.37753 * 6 4 3 8 8 C 1.53207 * 109.03992 * 56.98185 * 7 6 4 9 9 C 1.53092 * 109.14859 * 303.02293 * 8 7 6 10 10 H 1.09002 * 109.48343 * 297.61643 * 9 8 7 11 11 C 1.50700 * 109.47775 * 177.59222 * 9 8 7 12 12 H 1.07995 * 120.00137 * 0.02830 * 11 9 8 13 13 C 1.37881 * 120.00061 * 180.02562 * 11 9 8 14 14 N 1.31522 * 119.99559 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 120.00039 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47402 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47246 * 120.00037 * 15 13 11 18 18 H 1.48505 * 109.47276 * 240.00054 * 15 13 11 19 19 O 1.42898 * 109.47979 * 299.99739 * 4 3 2 20 20 H 1.09000 * 109.47883 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47059 * 300.00351 * 1 2 3 22 22 H 1.09007 * 109.47050 * 59.99726 * 1 2 3 23 23 H 1.09001 * 109.47271 * 59.99800 * 3 2 1 24 24 H 1.09008 * 109.47095 * 299.99932 * 3 2 1 25 25 H 1.09000 * 109.46667 * 299.97869 * 5 4 3 26 26 H 1.08997 * 109.46773 * 59.97284 * 5 4 3 27 27 H 1.09001 * 109.46814 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.51867 * 182.28617 * 6 4 3 29 29 H 1.09005 * 109.52093 * 302.40602 * 6 4 3 30 30 H 1.09004 * 109.54044 * 176.84782 * 7 6 4 31 31 H 1.09000 * 109.54126 * 297.02411 * 7 6 4 32 32 H 1.08999 * 109.53319 * 183.11811 * 8 7 6 33 33 H 1.08992 * 109.51748 * 62.92028 * 8 7 6 34 34 H 0.97001 * 119.99277 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 3.9867 0.4259 -1.2504 6 6 4.1587 2.5828 0.0000 7 6 3.7511 3.3144 1.2826 8 6 4.1881 2.4826 2.4928 9 6 3.5636 1.0882 2.3955 10 1 2.4774 1.1732 2.4274 11 6 4.0359 0.2445 3.5514 12 1 4.7130 0.6606 4.2826 13 6 3.6034 -1.0589 3.6756 14 7 2.7791 -1.5658 2.7849 15 14 4.1882 -2.1045 5.1087 16 1 5.1038 -1.3061 5.9628 17 1 3.0183 -2.5430 5.9113 18 1 4.9080 -3.2958 4.5911 19 8 3.9578 0.4751 1.1658 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6886 1.8463 -0.8901 25 1 3.5437 -0.5700 -1.2506 26 1 3.6645 0.9671 -2.1400 27 1 5.0734 0.3403 -1.2509 28 1 5.2446 2.4976 -0.0414 29 1 3.8038 3.1402 -0.8669 30 1 4.2367 4.2897 1.3160 31 1 2.6691 3.4450 1.2997 32 1 3.8531 2.9686 3.4091 33 1 5.2744 2.3955 2.5016 34 1 2.4752 -2.4828 2.8720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307000081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:51 Heat of formation + Delta-G solvation = -121.265168 kcal Electronic energy + Delta-G solvation = -15774.706229 eV Core-core repulsion = 13285.697527 eV Total energy + Delta-G solvation = -2489.008702 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63201 -37.98208 -35.12531 -34.05865 -33.25484 -29.34121 -28.25007 -26.95242 -26.14284 -23.75294 -22.30605 -19.90578 -18.59540 -17.45448 -17.12727 -16.55870 -16.11226 -15.95288 -15.33838 -14.98591 -14.60560 -14.20220 -13.87434 -13.52017 -13.08742 -12.86287 -12.80255 -12.68426 -12.53751 -12.27271 -12.18633 -11.97777 -11.70307 -11.59840 -11.10128 -10.72294 -10.42150 -10.27730 -9.53226 -8.00780 -6.23624 1.40322 1.42358 1.53686 2.44919 2.95288 3.20941 3.77659 3.95370 4.11958 4.18105 4.23721 4.39646 4.41005 4.51420 4.56143 4.62252 4.79654 4.85586 4.87894 4.92931 4.99012 5.10109 5.13904 5.25111 5.32039 5.35448 5.55002 5.64153 5.87434 6.32195 6.51389 6.77297 7.37454 7.52027 9.02471 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.012739 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.612420 B = 2197.418579 C = 2714.213175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.048 3.952 4 C 0.091 3.909 5 C -0.122 4.122 6 C -0.131 4.131 7 C -0.118 4.118 8 C -0.142 4.142 9 C 0.221 3.779 10 H -0.017 1.017 11 C -0.561 4.561 12 H 0.057 0.943 13 C 0.028 3.972 14 N -0.870 5.870 15 Si 0.952 3.048 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.283 1.283 19 O -0.372 6.372 20 H 0.082 0.918 21 H 0.026 0.974 22 H 0.058 0.942 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 7.585 -7.115 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.051 3.949 5 C -0.179 4.179 6 C -0.168 4.168 7 C -0.155 4.155 8 C -0.179 4.179 9 C 0.166 3.834 10 H 0.001 0.999 11 C -0.598 4.598 12 H 0.075 0.925 13 C -0.176 4.176 14 N -0.506 5.506 15 Si 0.778 3.222 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.209 1.209 19 O -0.292 6.292 20 H 0.100 0.900 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.696 7.099 -7.180 10.238 hybrid contribution -0.248 -0.444 0.984 1.108 sum -1.944 6.655 -6.196 9.298 Atomic orbital electron populations 1.22736 0.81320 1.02630 0.99588 1.88084 1.19771 1.27716 1.95100 1.23114 0.95373 0.85008 0.99395 1.21706 0.90939 0.93066 0.89189 1.21578 1.00890 1.00163 0.95270 1.22093 1.01189 0.94810 0.98733 1.21659 1.00831 0.98834 0.94181 1.22165 1.00282 0.97348 0.98151 1.19449 0.92137 0.89246 0.82604 0.99926 1.21415 1.30842 0.99012 1.08532 0.92465 1.25874 0.94514 0.99113 0.98109 1.70298 1.31327 1.14282 1.34665 0.85624 0.78312 0.78694 0.79618 1.19029 1.20273 1.20885 1.88313 1.76833 1.50966 1.13089 0.89984 0.95576 0.92329 0.94958 0.91483 0.94096 0.89308 0.92669 0.91233 0.88706 0.89772 0.92367 0.92446 0.93191 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 11.01 113.37 1.25 2.41 16 2 O -0.39 -17.26 9.92 -139.79 -1.39 -18.65 16 3 C 0.05 1.87 4.15 71.98 0.30 2.17 16 4 C 0.09 3.71 0.88 -10.76 -0.01 3.70 16 5 C -0.12 -4.39 8.70 71.98 0.63 -3.76 16 6 C -0.13 -4.22 4.92 30.69 0.15 -4.07 16 7 C -0.12 -3.91 5.72 30.72 0.18 -3.74 16 8 C -0.14 -6.07 5.36 30.69 0.16 -5.91 16 9 C 0.22 11.87 2.17 29.88 0.06 11.93 16 10 H -0.02 -0.98 6.34 -2.39 -0.02 -1.00 16 11 C -0.56 -33.05 8.79 25.60 0.23 -32.83 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C 0.03 1.65 5.40 84.65 0.46 2.11 16 14 N -0.87 -53.55 12.84 21.45 0.28 -53.27 16 15 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 19 O -0.37 -19.95 9.16 -139.79 -1.28 -21.24 16 20 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 21 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 22 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.03 1.35 4.98 -2.39 -0.01 1.34 16 24 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.04 1.68 7.68 -2.39 -0.02 1.66 16 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.06 1.90 6.62 -2.39 -0.02 1.88 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -69.81 271.13 4.09 -65.72 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.05 Total: 7.78 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 3.40 Total: -27.97 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.28 Total: -53.27 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -2.67 Total: -39.89 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -69.81 4.09 -65.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307000081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.542 kcal (2) G-P(sol) polarization free energy of solvation -69.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds