Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99414 * 2 1 4 4 C 1.52999 * 109.46947 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.48063 * 304.97752 * 4 3 2 6 6 C 1.53094 * 109.48504 * 184.94424 * 4 3 2 7 7 C 1.53180 * 109.16063 * 297.62965 * 6 4 3 8 8 C 1.53181 * 109.03168 * 303.01515 * 7 6 4 9 9 C 1.53092 * 109.16350 * 56.98227 * 8 7 6 10 10 H 1.09001 * 109.48772 * 62.38300 * 9 8 7 11 11 C 1.50706 * 109.47790 * 182.40663 * 9 8 7 12 12 H 1.08005 * 120.00138 * 359.94462 * 11 9 8 13 13 C 1.37871 * 119.99722 * 179.97438 * 11 9 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00073 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 119.99815 * 15 13 11 18 18 H 1.48498 * 109.47295 * 240.00422 * 15 13 11 19 19 O 1.42900 * 109.48235 * 64.99675 * 4 3 2 20 20 H 1.09008 * 109.46613 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47288 * 299.99794 * 1 2 3 22 22 H 1.09001 * 109.47456 * 60.00329 * 1 2 3 23 23 H 1.08999 * 109.47092 * 60.00496 * 3 2 1 24 24 H 1.08999 * 109.47476 * 299.99679 * 3 2 1 25 25 H 1.08994 * 109.47421 * 180.02562 * 5 4 3 26 26 H 1.09005 * 109.47292 * 300.02429 * 5 4 3 27 27 H 1.09002 * 109.47220 * 60.01938 * 5 4 3 28 28 H 1.09001 * 109.52061 * 57.52492 * 6 4 3 29 29 H 1.08998 * 109.52748 * 177.71835 * 6 4 3 30 30 H 1.09001 * 109.54677 * 62.87777 * 7 6 4 31 31 H 1.08997 * 109.54112 * 183.06156 * 7 6 4 32 32 H 1.09001 * 109.52016 * 297.07287 * 8 7 6 33 33 H 1.09003 * 109.51923 * 176.88732 * 8 7 6 34 34 H 0.97000 * 119.99651 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 3.9792 0.3201 1.1809 6 6 4.1579 2.5779 0.1237 7 6 3.7575 3.4180 -1.0930 8 6 4.2020 2.6943 -2.3678 9 6 3.5779 1.2967 -2.3959 10 1 2.4918 1.3840 -2.4269 11 6 4.0577 0.5565 -3.6178 12 1 4.7387 1.0349 -4.3062 13 6 3.6267 -0.7310 -3.8573 14 7 2.7965 -1.3131 -3.0196 15 14 4.2208 -1.6483 -5.3722 16 1 5.1411 -0.7786 -6.1482 17 1 4.9381 -2.8800 -4.9556 18 1 3.0561 -2.0154 -6.2171 19 8 3.9650 0.5798 -1.2219 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 5.0658 0.2345 1.1806 26 1 3.6514 0.7816 2.1124 27 1 3.5366 -0.6720 1.0916 28 1 3.7965 3.0585 1.0329 29 1 5.2435 2.4896 0.1641 30 1 2.6754 3.5482 -1.1061 31 1 4.2415 4.3931 -1.0380 32 1 5.2886 2.6083 -2.3777 33 1 3.8723 3.2581 -3.2404 34 1 2.4872 -0.8364 -2.2335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307000090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = -109.468327 kcal Electronic energy + Delta-G solvation = -15822.564904 eV Core-core repulsion = 13334.067751 eV Total energy + Delta-G solvation = -2488.497153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.23347 -36.63882 -33.47620 -32.59002 -31.30450 -27.54881 -26.88837 -25.19754 -24.45154 -22.03079 -20.88452 -18.50896 -17.00218 -16.04206 -15.72241 -14.84406 -14.48068 -13.99285 -13.76731 -13.52826 -13.31060 -12.87515 -12.23073 -11.85513 -11.61875 -11.44504 -11.23780 -10.98444 -10.86919 -10.68851 -10.39640 -10.30105 -10.14622 -10.00847 -9.39384 -9.07929 -8.49589 -8.23539 -7.96945 -6.19511 -4.00284 3.50116 3.55259 3.68027 4.25164 4.62135 4.98044 5.25971 5.42868 5.48642 5.55949 5.65238 5.66528 5.75272 5.79219 5.88979 5.93002 6.06911 6.15292 6.24067 6.26927 6.31948 6.50442 6.65726 6.68797 6.74024 6.85268 6.94768 7.38229 7.72502 8.22452 8.50639 8.89890 9.07370 9.83806 11.24572 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027918 B = 0.012699 C = 0.010263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.697809 B = 2204.387011 C = 2727.712081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.040 3.960 4 C 0.109 3.891 5 C -0.129 4.129 6 C -0.135 4.135 7 C -0.125 4.125 8 C -0.138 4.138 9 C 0.201 3.799 10 H 0.006 0.994 11 C -0.608 4.608 12 H 0.055 0.945 13 C 0.032 3.968 14 N -0.888 5.888 15 Si 1.072 2.928 16 H -0.290 1.290 17 H -0.287 1.287 18 H -0.288 1.288 19 O -0.353 6.353 20 H 0.082 0.918 21 H 0.029 0.971 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 6.288 6.736 9.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C -0.037 4.037 4 C 0.068 3.932 5 C -0.186 4.186 6 C -0.173 4.173 7 C -0.162 4.162 8 C -0.176 4.176 9 C 0.146 3.854 10 H 0.024 0.976 11 C -0.645 4.645 12 H 0.073 0.927 13 C -0.178 4.178 14 N -0.523 5.523 15 Si 0.901 3.099 16 H -0.216 1.216 17 H -0.213 1.213 18 H -0.215 1.215 19 O -0.273 6.273 20 H 0.101 0.899 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.775 4.524 5.936 7.672 hybrid contribution -0.263 2.097 0.868 2.285 sum -2.038 6.621 6.804 9.710 Atomic orbital electron populations 1.22659 0.82489 1.02310 0.98838 1.88041 1.18251 1.26852 1.95011 1.23184 0.95851 0.85330 0.99300 1.21283 0.89866 0.92303 0.89767 1.21608 1.01164 1.00920 0.94939 1.22105 1.01455 0.96051 0.97711 1.21700 1.00304 0.98068 0.96165 1.22152 1.01176 0.98879 0.95350 1.19913 0.93531 0.87863 0.84094 0.97610 1.21891 1.34049 1.03001 1.05575 0.92693 1.25782 0.94538 0.95108 1.02370 1.70490 1.27831 1.40561 1.13395 0.83538 0.75912 0.75618 0.74877 1.21643 1.21332 1.21460 1.88462 1.76898 1.50287 1.11642 0.89918 0.95226 0.94567 0.94392 0.92936 0.92623 0.92920 0.91150 0.92388 0.91083 0.92780 0.92870 0.92327 0.92497 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.68 16 2 O -0.36 -7.71 9.33 -40.07 -0.37 -8.09 16 3 C 0.04 0.79 4.19 37.16 0.16 0.95 16 4 C 0.11 2.24 0.90 -90.57 -0.08 2.16 16 5 C -0.13 -2.38 8.65 37.16 0.32 -2.06 16 6 C -0.14 -2.37 4.92 -26.59 -0.13 -2.50 16 7 C -0.12 -2.22 5.72 -26.54 -0.15 -2.38 16 8 C -0.14 -3.01 5.36 -26.59 -0.14 -3.15 16 9 C 0.20 5.30 1.78 -27.83 -0.05 5.25 16 10 H 0.01 0.18 6.10 -51.93 -0.32 -0.14 16 11 C -0.61 -17.88 8.79 -34.44 -0.30 -18.19 16 12 H 0.05 1.59 7.74 -52.48 -0.41 1.19 16 13 C 0.03 0.96 5.40 -17.82 -0.10 0.86 16 14 N -0.89 -27.93 13.53 55.43 0.75 -27.18 16 15 Si 1.07 26.08 29.90 -169.99 -5.08 20.99 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 O -0.35 -9.28 8.52 -40.07 -0.34 -9.62 16 20 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 21 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 1.09 4.97 -51.93 -0.26 0.83 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.43 7.56 -51.93 -0.39 1.03 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.93 6.73 -51.93 -0.35 0.58 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.29 9.27 6.00 -40.82 -0.25 9.02 16 LS Contribution 267.99 15.07 4.04 4.04 Total: -1.00 -32.67 267.99 -5.79 -38.46 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.41 Total: -1.23 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 0.63 Total: -17.38 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.75 Total: -27.18 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.72 Total: -17.70 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.67 -5.79 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307000090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.005 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds