Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99414 * 2 1 4 4 C 1.52999 * 109.46947 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.48063 * 304.97752 * 4 3 2 6 6 C 1.53094 * 109.48504 * 184.94424 * 4 3 2 7 7 C 1.53180 * 109.16063 * 297.62965 * 6 4 3 8 8 C 1.53181 * 109.03168 * 303.01515 * 7 6 4 9 9 C 1.53092 * 109.16350 * 56.98227 * 8 7 6 10 10 H 1.09001 * 109.48772 * 62.38300 * 9 8 7 11 11 C 1.50706 * 109.47790 * 182.40663 * 9 8 7 12 12 H 1.08005 * 120.00138 * 359.94462 * 11 9 8 13 13 C 1.37871 * 119.99722 * 179.97438 * 11 9 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00073 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 119.99815 * 15 13 11 18 18 H 1.48498 * 109.47295 * 240.00422 * 15 13 11 19 19 O 1.42900 * 109.48235 * 64.99675 * 4 3 2 20 20 H 1.09008 * 109.46613 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47288 * 299.99794 * 1 2 3 22 22 H 1.09001 * 109.47456 * 60.00329 * 1 2 3 23 23 H 1.08999 * 109.47092 * 60.00496 * 3 2 1 24 24 H 1.08999 * 109.47476 * 299.99679 * 3 2 1 25 25 H 1.08994 * 109.47421 * 180.02562 * 5 4 3 26 26 H 1.09005 * 109.47292 * 300.02429 * 5 4 3 27 27 H 1.09002 * 109.47220 * 60.01938 * 5 4 3 28 28 H 1.09001 * 109.52061 * 57.52492 * 6 4 3 29 29 H 1.08998 * 109.52748 * 177.71835 * 6 4 3 30 30 H 1.09001 * 109.54677 * 62.87777 * 7 6 4 31 31 H 1.08997 * 109.54112 * 183.06156 * 7 6 4 32 32 H 1.09001 * 109.52016 * 297.07287 * 8 7 6 33 33 H 1.09003 * 109.51923 * 176.88732 * 8 7 6 34 34 H 0.97000 * 119.99651 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 3.9792 0.3201 1.1809 6 6 4.1579 2.5779 0.1237 7 6 3.7575 3.4180 -1.0930 8 6 4.2020 2.6943 -2.3678 9 6 3.5779 1.2967 -2.3959 10 1 2.4918 1.3840 -2.4269 11 6 4.0577 0.5565 -3.6178 12 1 4.7387 1.0349 -4.3062 13 6 3.6267 -0.7310 -3.8573 14 7 2.7965 -1.3131 -3.0196 15 14 4.2208 -1.6483 -5.3722 16 1 5.1411 -0.7786 -6.1482 17 1 4.9381 -2.8800 -4.9556 18 1 3.0561 -2.0154 -6.2171 19 8 3.9650 0.5798 -1.2219 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 5.0658 0.2345 1.1806 26 1 3.6514 0.7816 2.1124 27 1 3.5366 -0.6720 1.0916 28 1 3.7965 3.0585 1.0329 29 1 5.2435 2.4896 0.1641 30 1 2.6754 3.5482 -1.1061 31 1 4.2415 4.3931 -1.0380 32 1 5.2886 2.6083 -2.3777 33 1 3.8723 3.2581 -3.2404 34 1 2.4872 -0.8364 -2.2335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307000090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = -131.502333 kcal Electronic energy + Delta-G solvation = -15823.520370 eV Core-core repulsion = 13334.067751 eV Total energy + Delta-G solvation = -2489.452619 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89396 -38.20929 -35.42826 -34.26895 -33.21902 -29.25938 -28.36020 -26.83755 -26.18765 -23.87380 -22.57592 -20.13463 -19.11779 -17.63154 -17.27280 -16.42291 -16.16515 -15.68586 -15.54494 -15.32840 -15.02833 -14.33540 -13.75911 -13.57164 -13.19573 -13.02837 -12.84895 -12.73533 -12.62005 -12.34209 -12.00765 -11.93141 -11.85105 -11.80644 -11.07518 -10.65389 -10.57701 -10.28421 -9.84229 -8.52055 -6.34493 1.52009 1.62733 1.78569 2.59007 2.80582 3.14755 3.61058 3.80715 3.98241 4.04120 4.08991 4.26475 4.28691 4.36154 4.46748 4.49413 4.62417 4.73677 4.76883 4.80755 4.87359 4.93762 5.01303 5.12459 5.17903 5.21613 5.42783 5.51368 6.08232 6.21093 6.30933 6.72949 7.05125 7.60454 8.91249 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027918 B = 0.012699 C = 0.010263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.697809 B = 2204.387011 C = 2727.712081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.401 6.401 3 C 0.043 3.957 4 C 0.089 3.911 5 C -0.123 4.123 6 C -0.129 4.129 7 C -0.118 4.118 8 C -0.134 4.134 9 C 0.202 3.798 10 H -0.021 1.021 11 C -0.632 4.632 12 H 0.050 0.950 13 C -0.020 4.020 14 N -0.919 5.919 15 Si 1.119 2.881 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.276 1.276 19 O -0.389 6.389 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.027 0.973 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 7.679 7.845 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C -0.033 4.033 4 C 0.049 3.951 5 C -0.180 4.180 6 C -0.167 4.167 7 C -0.156 4.156 8 C -0.172 4.172 9 C 0.147 3.853 10 H -0.003 1.003 11 C -0.669 4.669 12 H 0.068 0.932 13 C -0.223 4.223 14 N -0.554 5.554 15 Si 0.941 3.059 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.202 1.202 19 O -0.310 6.310 20 H 0.106 0.894 21 H 0.083 0.917 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.568 5.941 7.058 9.358 hybrid contribution -0.360 1.695 0.595 1.832 sum -1.928 7.636 7.653 10.982 Atomic orbital electron populations 1.22833 0.80565 1.03177 1.00109 1.87995 1.20584 1.28129 1.95258 1.23194 0.95129 0.84925 1.00095 1.21793 0.91011 0.94382 0.87869 1.21591 1.01017 0.99519 0.95883 1.22082 1.01294 0.94020 0.99268 1.21671 1.00958 0.99077 0.93866 1.22034 1.00205 0.96845 0.98107 1.19682 0.92034 0.89854 0.83747 1.00345 1.22356 1.33648 1.03534 1.07385 0.93212 1.27282 0.93946 0.96475 1.04602 1.70599 1.29828 1.41004 1.14017 0.82940 0.76210 0.74818 0.71924 1.19688 1.20872 1.20175 1.88312 1.77417 1.51855 1.13399 0.89429 0.91668 0.95394 0.90457 0.94889 0.92580 0.88876 0.93954 0.88208 0.91146 0.92227 0.89399 0.93190 0.92431 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.40 -17.03 9.33 -144.36 -1.35 -18.38 16 3 C 0.04 1.64 4.19 71.98 0.30 1.94 16 4 C 0.09 3.57 0.90 -10.76 -0.01 3.56 16 5 C -0.12 -4.35 8.65 71.98 0.62 -3.73 16 6 C -0.13 -4.09 4.92 30.69 0.15 -3.93 16 7 C -0.12 -3.88 5.72 30.71 0.18 -3.71 16 8 C -0.13 -5.80 5.36 30.69 0.16 -5.63 16 9 C 0.20 10.91 1.78 29.88 0.05 10.96 16 10 H -0.02 -1.21 6.10 -2.39 -0.01 -1.22 16 11 C -0.63 -38.15 8.79 25.60 0.23 -37.92 16 12 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 13 C -0.02 -1.19 5.40 84.65 0.46 -0.74 16 14 N -0.92 -59.59 13.53 21.45 0.29 -59.30 16 15 Si 1.12 53.09 29.90 68.60 2.05 55.15 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 O -0.39 -20.81 8.52 -144.36 -1.23 -22.04 16 20 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.03 1.36 4.97 -2.39 -0.01 1.35 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.04 1.71 7.56 -2.39 -0.02 1.69 16 28 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 1.90 6.73 -2.39 -0.02 1.88 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.28 18.59 6.00 -92.71 -0.56 18.03 16 Total: -1.00 -73.43 267.99 4.42 -69.01 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.27 Total: 12.55 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 3.39 Total: -36.99 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.29 Total: -59.30 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -2.58 Total: -40.41 kcal Atomic # 14 Polarization: 53.09 SS G_CDS: 2.05 Total: 55.15 kcal Total: -73.43 4.42 -69.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307000090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.490 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds