Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00015 * 2 1 4 4 C 1.53000 * 109.46925 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.49129 * 59.96900 * 4 3 2 6 6 C 1.53091 * 109.47862 * 179.97438 * 4 3 2 7 7 C 1.53176 * 109.21206 * 177.62293 * 6 4 3 8 8 C 1.53174 * 109.04061 * 302.98570 * 7 6 4 9 9 C 1.53097 * 109.16185 * 56.97999 * 8 7 6 10 10 H 1.08997 * 109.47568 * 62.38867 * 9 8 7 11 11 C 1.50697 * 109.48105 * 182.41126 * 9 8 7 12 12 H 1.08007 * 120.00074 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00214 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99822 * 359.97438 * 13 11 9 15 15 Si 1.86793 * 120.00451 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46855 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47438 * 119.99581 * 15 13 11 18 18 H 1.48500 * 109.47126 * 240.00215 * 15 13 11 19 19 O 1.42902 * 109.41493 * 302.39739 * 9 8 7 20 20 H 1.09004 * 109.46993 * 60.00298 * 1 2 3 21 21 H 1.09006 * 109.47137 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47749 * 300.00392 * 1 2 3 23 23 H 1.09002 * 109.46848 * 59.99701 * 3 2 1 24 24 H 1.08995 * 109.46900 * 299.99581 * 3 2 1 25 25 H 1.09000 * 109.46897 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.46893 * 300.03088 * 5 4 3 27 27 H 1.09004 * 109.47002 * 60.02467 * 5 4 3 28 28 H 1.09002 * 109.52401 * 57.68445 * 6 4 3 29 29 H 1.09004 * 109.52068 * 297.56090 * 6 4 3 30 30 H 1.08995 * 109.54674 * 62.85906 * 7 6 4 31 31 H 1.08999 * 109.54128 * 183.11874 * 7 6 4 32 32 H 1.08995 * 109.52612 * 176.89131 * 8 7 6 33 33 H 1.09004 * 109.52214 * 297.01676 * 8 7 6 34 34 H 0.96999 * 120.00091 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9878 0.4245 -1.2477 6 6 4.1583 2.5831 0.0000 7 6 5.6836 2.4555 0.0606 8 6 6.0686 1.6497 1.3051 9 6 5.3730 0.2868 1.2563 10 1 5.7195 -0.2670 0.3837 11 6 5.6996 -0.4892 2.5061 12 1 6.3395 -0.0545 3.2599 13 6 5.1826 -1.7545 2.6870 14 7 4.4038 -2.2840 1.7689 15 14 5.5868 -2.7161 4.2365 16 1 6.4757 -1.9036 5.1054 17 1 4.3320 -3.0293 4.9663 18 1 6.2746 -3.9799 3.8694 19 8 3.9595 0.4776 1.1695 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3635 0.5139 0.8899 23 1 1.6885 1.8464 0.8900 24 1 1.6886 1.8463 -0.8900 25 1 5.0744 0.3382 -1.2467 26 1 3.5442 -0.5711 -1.2475 27 1 3.6671 0.9650 -2.1384 28 1 3.8046 3.1399 0.8677 29 1 3.8727 3.1087 -0.9112 30 1 6.0424 1.9423 -0.8315 31 1 6.1305 3.4481 0.1163 32 1 7.1489 1.5069 1.3268 33 1 5.7543 2.1882 2.1993 34 1 4.0403 -3.1743 1.8959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307000102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -101.728925 kcal Electronic energy + Delta-G solvation = -15586.210041 eV Core-core repulsion = 13098.048494 eV Total energy + Delta-G solvation = -2488.161547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.88251 -36.80745 -33.11529 -32.31045 -31.26102 -27.62149 -26.82767 -25.52763 -24.48630 -21.96810 -20.63126 -18.07016 -16.52420 -15.85777 -15.58475 -14.95566 -14.45043 -14.30909 -14.04400 -13.56771 -12.81323 -12.45661 -12.17882 -11.91427 -11.56054 -11.39642 -11.02122 -10.89460 -10.81962 -10.60200 -10.39559 -10.27555 -10.10108 -9.68064 -9.39900 -9.09283 -8.69927 -8.35842 -7.69465 -5.87530 -4.00466 3.36428 3.44219 3.47737 4.34306 4.50811 4.97410 5.44259 5.51171 5.58047 5.64296 5.67148 5.72906 5.81343 5.89764 6.01945 6.06770 6.13448 6.23675 6.32628 6.41030 6.56842 6.61094 6.74645 6.91367 6.99432 7.02758 7.22934 7.65351 7.78558 8.01392 8.41029 8.90566 9.27726 9.68776 11.18718 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.012578 C = 0.009281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.809538 B = 2225.542692 C = 3016.087199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.082 3.918 4 C 0.110 3.890 5 C -0.163 4.163 6 C -0.138 4.138 7 C -0.119 4.119 8 C -0.146 4.146 9 C 0.217 3.783 10 H 0.019 0.981 11 C -0.530 4.530 12 H 0.062 0.938 13 C 0.079 3.921 14 N -0.848 5.848 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.284 1.284 19 O -0.336 6.336 20 H 0.030 0.970 21 H 0.080 0.920 22 H 0.034 0.966 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 7.137 -5.063 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.005 3.995 4 C 0.069 3.931 5 C -0.220 4.220 6 C -0.176 4.176 7 C -0.156 4.156 8 C -0.184 4.184 9 C 0.161 3.839 10 H 0.036 0.964 11 C -0.568 4.568 12 H 0.080 0.920 13 C -0.128 4.128 14 N -0.484 5.484 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.256 6.256 20 H 0.048 0.952 21 H 0.099 0.901 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.980 6.742 -4.978 9.278 hybrid contribution 0.036 -0.135 0.619 0.635 sum -3.944 6.607 -4.359 8.844 Atomic orbital electron populations 1.22666 0.82943 1.02140 0.98799 1.88157 1.17684 1.26926 1.94979 1.22468 0.93328 0.84967 0.98721 1.21193 0.91022 0.90959 0.89930 1.22243 1.01842 1.01748 0.96154 1.22091 0.96819 0.97687 1.00954 1.21615 0.94968 0.99413 0.99638 1.22287 1.00350 0.99632 0.96081 1.19720 0.78120 0.88791 0.97225 0.96381 1.21004 1.30872 0.99230 1.05678 0.92015 1.25062 0.94180 0.97476 0.96046 1.70078 1.30127 1.15206 1.32944 0.86637 0.78129 0.79921 0.83842 1.19756 1.20955 1.21039 1.88472 1.25724 1.74224 1.37136 0.95178 0.90132 0.94744 0.93647 0.93845 0.92271 0.90973 0.94241 0.91927 0.92651 0.92310 0.93240 0.92599 0.92679 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.54 9.93 -44.53 -0.44 -7.98 16 3 C 0.08 1.55 5.06 37.16 0.19 1.74 16 4 C 0.11 2.32 0.89 -90.57 -0.08 2.24 16 5 C -0.16 -3.31 7.79 37.16 0.29 -3.02 16 6 C -0.14 -2.45 4.91 -26.59 -0.13 -2.58 16 7 C -0.12 -2.15 5.72 -26.55 -0.15 -2.30 16 8 C -0.15 -3.16 5.36 -26.59 -0.14 -3.31 16 9 C 0.22 5.72 2.17 -27.83 -0.06 5.66 16 10 H 0.02 0.52 6.35 -51.93 -0.33 0.19 16 11 C -0.53 -15.33 8.79 -34.44 -0.30 -15.63 16 12 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 13 C 0.08 2.30 5.40 -17.82 -0.10 2.20 16 14 N -0.85 -25.70 12.84 55.43 0.71 -24.99 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 O -0.34 -8.94 9.17 -44.53 -0.41 -9.35 16 20 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 21 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.23 4.98 -51.93 -0.26 0.97 16 26 H 0.07 1.65 7.68 -51.93 -0.40 1.26 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.04 6.62 -51.93 -0.34 0.69 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 271.15 15.07 4.09 4.09 Total: -1.00 -31.90 271.15 -5.97 -37.87 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.52 Total: -3.12 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 0.63 Total: -13.39 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.71 Total: -24.99 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.85 Total: -17.34 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.90 -5.97 -37.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307000102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.862 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds