Wall clock time and date at job start Mon Mar 30 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42895 * 114.00169 * 2 1 4 4 C 1.53006 * 109.47000 * 300.00185 * 3 2 1 5 5 C 1.52999 * 109.47485 * 59.99725 * 3 2 1 6 6 C 1.52997 * 109.47503 * 180.02562 * 3 2 1 7 7 H 1.09001 * 110.33119 * 62.25013 * 6 3 2 8 8 C 1.54474 * 110.37382 * 299.99817 * 6 3 2 9 9 C 1.54509 * 104.06566 * 217.18943 * 8 6 3 10 10 C 1.54480 * 104.06046 * 359.97438 * 9 8 6 11 11 H 1.09001 * 110.37172 * 265.03605 * 10 9 8 12 12 C 1.50704 * 110.36939 * 142.81149 * 10 9 8 13 13 H 1.07998 * 119.99926 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99681 * 179.97438 * 12 10 9 15 15 N 1.31511 * 119.99822 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 119.99700 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47426 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47172 * 119.99894 * 16 14 12 19 19 H 1.48503 * 109.46933 * 240.00115 * 16 14 12 20 20 O 1.44415 * 104.80410 * 23.97929 * 10 9 8 21 21 H 1.09006 * 109.47086 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47018 * 299.99949 * 1 2 3 23 23 H 1.09000 * 109.47431 * 60.00200 * 1 2 3 24 24 H 1.09001 * 109.46801 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.46998 * 299.99473 * 4 3 2 26 26 H 1.09000 * 109.47050 * 59.99764 * 4 3 2 27 27 H 1.09000 * 109.47160 * 300.00600 * 5 3 2 28 28 H 1.09002 * 109.46719 * 60.00320 * 5 3 2 29 29 H 1.08993 * 109.47839 * 180.02562 * 5 3 2 30 30 H 1.08998 * 110.51063 * 335.83664 * 8 6 3 31 31 H 1.09004 * 110.51269 * 98.54302 * 8 6 3 32 32 H 1.09003 * 110.51311 * 118.64579 * 9 8 6 33 33 H 1.09004 * 110.50932 * 241.21436 * 9 8 6 34 34 H 0.97000 * 119.99853 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0647 -1.2493 5 6 1.5587 2.0648 1.2492 6 6 3.5354 1.1846 -0.0006 7 1 3.8750 0.6805 -0.9054 8 6 4.0149 0.4202 1.2531 9 6 5.3256 1.1354 1.6505 10 6 5.4833 2.2469 0.5894 11 1 6.1249 1.9071 -0.2236 12 6 6.0495 3.4946 1.2169 13 1 6.2806 3.5115 2.2717 14 6 6.2725 4.6146 0.4442 15 7 5.9914 4.5938 -0.8404 16 14 6.9736 6.1614 1.2221 17 1 7.2009 5.9277 2.6709 18 1 8.2617 6.5045 0.5675 19 1 6.0151 7.2820 1.0464 20 8 4.1437 2.4898 0.1076 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 2.0017 3.0606 -1.2490 25 1 1.8803 1.5238 -2.1393 26 1 0.4721 2.1507 -1.2492 27 1 0.4721 2.1508 1.2492 28 1 1.8804 1.5239 2.1392 29 1 2.0017 3.0606 1.2490 30 1 3.2789 0.4992 2.0533 31 1 4.2080 -0.6252 1.0125 32 1 5.2377 1.5679 2.6472 33 1 6.1663 0.4428 1.6087 34 1 6.1479 5.3818 -1.3839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307126983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:27 Heat of formation + Delta-G solvation = -117.680600 kcal Electronic energy + Delta-G solvation = -15434.353118 eV Core-core repulsion = 12945.499855 eV Total energy + Delta-G solvation = -2488.853264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75941 -38.79568 -34.86405 -33.42659 -32.61213 -29.91235 -28.36517 -27.92426 -26.17772 -23.38950 -21.78284 -20.58651 -18.87362 -17.26090 -16.99526 -16.75177 -16.27865 -16.02569 -15.53169 -15.00147 -14.53108 -14.18372 -13.95211 -13.63971 -13.30080 -12.97126 -12.83897 -12.77220 -12.40427 -12.29206 -12.22722 -12.06482 -11.89385 -11.32294 -11.09858 -11.03508 -10.73345 -10.44945 -10.04303 -8.16863 -6.37037 1.40567 1.41616 1.54439 2.40186 2.60502 3.14376 3.72041 3.75282 3.96950 4.06562 4.20602 4.29901 4.50104 4.54302 4.62100 4.65671 4.69621 4.75764 4.80451 4.89260 4.93610 5.05863 5.13140 5.14364 5.22493 5.26633 5.46589 5.51162 5.73406 6.15361 6.34394 6.54580 6.89574 7.38203 8.91997 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045797 B = 0.008777 C = 0.008163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.246075 B = 3189.263942 C = 3429.304901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.394 6.394 3 C 0.126 3.874 4 C -0.165 4.165 5 C -0.164 4.164 6 C 0.071 3.929 7 H 0.039 0.961 8 C -0.133 4.133 9 C -0.140 4.140 10 C 0.198 3.802 11 H -0.009 1.009 12 C -0.548 4.548 13 H 0.066 0.934 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.964 3.036 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.280 1.280 20 O -0.369 6.369 21 H 0.103 0.897 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.822 -6.822 2.719 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.313 6.313 3 C 0.087 3.913 4 C -0.223 4.223 5 C -0.221 4.221 6 C 0.013 3.987 7 H 0.057 0.943 8 C -0.170 4.170 9 C -0.178 4.178 10 C 0.142 3.858 11 H 0.009 0.991 12 C -0.585 4.585 13 H 0.085 0.915 14 C -0.180 4.180 15 N -0.541 5.541 16 Si 0.788 3.212 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.206 1.206 20 O -0.288 6.288 21 H 0.121 0.879 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.804 -6.691 2.514 12.133 hybrid contribution 0.500 0.918 -0.079 1.048 sum -9.303 -5.773 2.435 11.216 Atomic orbital electron populations 1.23004 0.79817 1.03876 1.00999 1.87851 1.21378 1.26852 1.95268 1.21124 0.91424 0.83280 0.95447 1.22253 1.01978 1.00595 0.97450 1.22266 1.01623 1.00773 0.97448 1.22647 0.92144 0.86858 0.97098 0.94291 1.22863 0.97043 0.99300 0.97791 1.22941 0.97413 0.97443 1.00002 1.20424 0.81122 0.93871 0.90369 0.99148 1.21474 1.42682 0.98619 0.95719 0.91546 1.25985 0.94592 1.02288 0.95164 1.70178 1.47021 1.30183 1.06691 0.85440 0.77947 0.78713 0.79107 1.18518 1.20089 1.20600 1.89362 1.28102 1.24017 1.87366 0.87885 0.92920 0.93182 0.93021 0.92648 0.90110 0.90412 0.91685 0.92837 0.90133 0.90305 0.91818 0.91282 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.21 113.37 1.16 1.56 16 2 O -0.39 -12.18 10.02 -148.98 -1.49 -13.67 16 3 C 0.13 4.43 0.66 -10.79 -0.01 4.42 16 4 C -0.17 -5.59 8.15 71.98 0.59 -5.01 16 5 C -0.16 -5.39 7.83 71.98 0.56 -4.82 16 6 C 0.07 3.03 2.73 31.09 0.08 3.11 16 7 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 8 C -0.13 -5.00 6.15 31.61 0.19 -4.80 16 9 C -0.14 -6.01 6.62 31.61 0.21 -5.80 16 10 C 0.20 10.67 3.06 30.35 0.09 10.76 16 11 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 12 C -0.55 -31.49 8.77 25.60 0.22 -31.26 16 13 H 0.07 3.67 7.57 -2.91 -0.02 3.65 16 14 C 0.02 1.24 5.43 84.66 0.46 1.70 16 15 N -0.90 -55.10 13.07 21.45 0.28 -54.82 16 16 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 O -0.37 -19.55 9.52 -148.98 -1.42 -20.97 16 21 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 22 H 0.05 1.03 6.42 -2.39 -0.02 1.01 16 23 H 0.05 1.00 6.42 -2.39 -0.02 0.98 16 24 H 0.05 2.05 7.85 -2.39 -0.02 2.03 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 2.16 6.54 -2.39 -0.02 2.15 16 27 H 0.08 2.03 6.54 -2.39 -0.02 2.02 16 28 H 0.06 2.07 6.11 -2.39 -0.01 2.05 16 29 H 0.05 2.07 7.61 -2.39 -0.02 2.06 16 30 H 0.08 2.81 5.79 -2.39 -0.01 2.79 16 31 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.06 2.69 7.71 -2.39 -0.02 2.67 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -65.87 268.81 4.03 -61.84 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.07 Total: 11.39 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 3.57 Total: -30.12 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.28 Total: -54.82 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -2.91 Total: -34.64 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -65.87 4.03 -61.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.842 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds