Wall clock time and date at job start Mon Mar 30 2020 02:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00488 * 2 1 4 4 C 1.52999 * 109.47088 * 59.99571 * 3 2 1 5 5 C 1.53008 * 109.46715 * 300.00076 * 3 2 1 6 6 C 1.52998 * 109.47581 * 179.97438 * 3 2 1 7 7 H 1.09000 * 110.54956 * 181.54388 * 6 3 2 8 8 C 1.54994 * 110.74976 * 304.51411 * 6 3 2 9 9 C 1.54812 * 102.09202 * 155.58702 * 8 6 3 10 10 C 1.54097 * 104.18868 * 339.12123 * 9 8 6 11 11 H 1.09004 * 110.00833 * 117.46034 * 10 9 8 12 12 C 1.50704 * 109.88030 * 238.54713 * 10 9 8 13 13 H 1.07991 * 119.99533 * 359.28170 * 12 10 9 14 14 C 1.37879 * 120.00155 * 179.01082 * 12 10 9 15 15 N 1.31513 * 120.00130 * 180.27483 * 14 12 10 16 16 Si 1.86804 * 119.99934 * 0.27020 * 14 12 10 17 17 H 1.48498 * 109.47168 * 89.99883 * 16 14 12 18 18 H 1.48496 * 109.47230 * 210.00400 * 16 14 12 19 19 H 1.48503 * 109.46919 * 330.00043 * 16 14 12 20 20 O 1.43748 * 107.29284 * 357.96804 * 10 9 8 21 21 H 1.08999 * 109.47141 * 300.00478 * 1 2 3 22 22 H 1.09004 * 109.46845 * 60.00549 * 1 2 3 23 23 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47163 * 180.02562 * 4 3 2 25 25 H 1.09003 * 109.47243 * 300.00141 * 4 3 2 26 26 H 1.08996 * 109.47066 * 60.00390 * 4 3 2 27 27 H 1.09001 * 109.46824 * 306.04499 * 5 3 2 28 28 H 1.08993 * 109.47488 * 66.04925 * 5 3 2 29 29 H 1.09000 * 109.46947 * 186.05516 * 5 3 2 30 30 H 1.08996 * 110.90926 * 273.78518 * 8 6 3 31 31 H 1.09003 * 110.91167 * 37.35917 * 8 6 3 32 32 H 1.08997 * 110.49291 * 220.44228 * 9 8 6 33 33 H 1.09001 * 110.48467 * 97.79660 * 9 8 6 34 34 H 0.96998 * 119.99985 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0646 -1.2493 6 6 3.5355 1.1846 0.0006 7 1 3.9975 2.1714 0.0282 8 6 4.0176 0.3227 1.1953 9 6 5.3849 -0.1976 0.6889 10 6 5.2985 -0.0574 -0.8432 11 1 6.0558 0.6424 -1.1970 12 6 5.5001 -1.4020 -1.4931 13 1 5.6848 -2.2741 -0.8834 14 6 5.4431 -1.5199 -2.8656 15 7 5.6136 -2.6943 -3.4325 16 14 5.1235 -0.0115 -3.9202 17 1 6.4164 0.6259 -4.2772 18 1 4.4119 -0.4155 -5.1593 19 1 4.2881 0.9544 -3.1621 20 8 3.9873 0.4436 -1.1532 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 2.0019 3.0606 1.2490 25 1 0.4722 2.1509 1.2491 26 1 1.8804 1.5238 2.1392 27 1 1.7850 1.4723 -2.1360 28 1 0.4852 2.2448 -1.1969 29 1 2.0849 3.0176 -1.3052 30 1 4.1407 0.9326 2.0902 31 1 3.3311 -0.5033 1.3811 32 1 5.5234 -1.2417 0.9692 33 1 6.1958 0.4150 1.0830 34 1 5.5732 -2.7773 -4.3980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307126984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:29 Heat of formation + Delta-G solvation = -92.171832 kcal Electronic energy + Delta-G solvation = -15620.476038 eV Core-core repulsion = 13132.728918 eV Total energy + Delta-G solvation = -2487.747120 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.29207 -37.28462 -32.93213 -32.08020 -31.02151 -28.53049 -27.13086 -26.62237 -24.22820 -21.69078 -19.87673 -19.43787 -17.02437 -16.31126 -15.48347 -14.95463 -14.79514 -14.26885 -13.88626 -13.31025 -12.90032 -12.70421 -12.51413 -12.26021 -12.09591 -11.82597 -11.61232 -11.15892 -10.86835 -10.78917 -10.71359 -10.02887 -9.89203 -9.78044 -9.55863 -9.29340 -9.13657 -8.43829 -8.16141 -5.99565 -4.05826 3.45158 3.50285 3.76377 4.12122 4.62967 4.68681 5.02522 5.18387 5.35292 5.49236 5.56855 5.60407 5.63652 5.65380 5.75537 5.77563 5.90607 5.96609 6.06027 6.09750 6.18936 6.31578 6.46573 6.58264 6.63363 6.79644 6.90514 7.26715 7.64849 7.73664 8.33452 8.55523 9.02347 9.65519 11.11448 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032738 B = 0.011706 C = 0.010577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.081401 B = 2391.424537 C = 2646.541616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.119 3.881 4 C -0.175 4.175 5 C -0.172 4.172 6 C 0.080 3.920 7 H 0.061 0.939 8 C -0.141 4.141 9 C -0.135 4.135 10 C 0.166 3.834 11 H 0.022 0.978 12 C -0.516 4.516 13 H 0.076 0.924 14 C 0.082 3.918 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.222 1.222 20 O -0.357 6.357 21 H 0.036 0.964 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.487 10.429 8.051 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.274 6.274 3 C 0.080 3.920 4 C -0.233 4.233 5 C -0.229 4.229 6 C 0.021 3.979 7 H 0.079 0.921 8 C -0.179 4.179 9 C -0.173 4.173 10 C 0.111 3.889 11 H 0.040 0.960 12 C -0.553 4.553 13 H 0.094 0.906 14 C -0.121 4.121 15 N -0.534 5.534 16 Si 0.696 3.304 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.145 1.145 20 O -0.277 6.277 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.479 10.135 7.697 15.292 hybrid contribution -0.253 0.872 -0.507 1.040 sum -8.731 11.006 7.189 15.782 Atomic orbital electron populations 1.22734 0.82927 1.02214 0.99313 1.88167 1.18026 1.26457 1.94725 1.21463 0.93350 0.83570 0.93648 1.22390 1.01380 1.00811 0.98695 1.22325 1.00173 1.00833 0.99605 1.22888 0.90564 0.95500 0.88934 0.92095 1.23025 0.98113 0.99864 0.96859 1.22849 0.95314 1.01421 0.97730 1.20704 0.81905 0.94988 0.91323 0.96046 1.21119 1.49178 0.92906 0.92087 0.90591 1.25039 0.92736 0.96128 0.98238 1.69933 1.49109 1.23681 1.10694 0.86998 0.78828 0.85065 0.79477 1.21383 1.21966 1.14517 1.89355 1.35078 1.69449 1.33850 0.94577 0.94295 0.90099 0.91708 0.92272 0.91544 0.90677 0.93074 0.92041 0.92470 0.90148 0.90922 0.93097 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.21 101.05 1.03 1.38 16 2 O -0.36 -6.62 9.28 -43.37 -0.40 -7.02 16 3 C 0.12 1.98 0.63 -90.62 -0.06 1.93 16 4 C -0.18 -2.21 8.08 37.16 0.30 -1.91 16 5 C -0.17 -2.70 7.87 37.16 0.29 -2.41 16 6 C 0.08 1.52 2.62 -25.68 -0.07 1.46 16 7 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 8 C -0.14 -2.58 5.62 -24.72 -0.14 -2.72 16 9 C -0.14 -2.81 6.63 -25.20 -0.17 -2.98 16 10 C 0.17 4.16 2.72 -27.31 -0.07 4.09 16 11 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 12 C -0.52 -15.30 9.36 -34.44 -0.32 -15.62 16 13 H 0.08 2.41 7.58 -52.49 -0.40 2.01 16 14 C 0.08 2.49 5.47 -17.82 -0.10 2.40 16 15 N -0.90 -28.52 13.96 55.43 0.77 -27.74 16 16 Si 0.87 22.74 27.02 -169.99 -4.59 18.15 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 19 H -0.22 -5.63 5.37 56.52 0.30 -5.32 16 20 O -0.36 -8.74 7.34 -43.37 -0.32 -9.05 16 21 H 0.04 0.42 6.42 -51.93 -0.33 0.09 16 22 H 0.04 0.51 6.56 -51.93 -0.34 0.17 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 26 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 27 H 0.07 1.40 7.95 -51.93 -0.41 0.99 16 28 H 0.05 0.67 6.88 -51.93 -0.36 0.31 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 31 H 0.08 1.57 7.26 -51.93 -0.38 1.19 16 32 H 0.07 1.58 7.40 -51.93 -0.38 1.19 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -32.97 264.98 -5.33 -38.30 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.48 Total: -2.23 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 0.70 Total: -14.40 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: 0.77 Total: -27.74 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.72 Total: -16.07 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.59 Total: 18.15 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.97 -5.33 -38.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.873 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds