Wall clock time and date at job start Mon Mar 30 2020 02:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00488 * 2 1 4 4 C 1.52999 * 109.47088 * 59.99571 * 3 2 1 5 5 C 1.53008 * 109.46715 * 300.00076 * 3 2 1 6 6 C 1.52998 * 109.47581 * 179.97438 * 3 2 1 7 7 H 1.09000 * 110.54956 * 181.54388 * 6 3 2 8 8 C 1.54994 * 110.74976 * 304.51411 * 6 3 2 9 9 C 1.54812 * 102.09202 * 155.58702 * 8 6 3 10 10 C 1.54097 * 104.18868 * 339.12123 * 9 8 6 11 11 H 1.09004 * 110.00833 * 117.46034 * 10 9 8 12 12 C 1.50704 * 109.88030 * 238.54713 * 10 9 8 13 13 H 1.07991 * 119.99533 * 359.28170 * 12 10 9 14 14 C 1.37879 * 120.00155 * 179.01082 * 12 10 9 15 15 N 1.31513 * 120.00130 * 180.27483 * 14 12 10 16 16 Si 1.86804 * 119.99934 * 0.27020 * 14 12 10 17 17 H 1.48498 * 109.47168 * 89.99883 * 16 14 12 18 18 H 1.48496 * 109.47230 * 210.00400 * 16 14 12 19 19 H 1.48503 * 109.46919 * 330.00043 * 16 14 12 20 20 O 1.43748 * 107.29284 * 357.96804 * 10 9 8 21 21 H 1.08999 * 109.47141 * 300.00478 * 1 2 3 22 22 H 1.09004 * 109.46845 * 60.00549 * 1 2 3 23 23 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47163 * 180.02562 * 4 3 2 25 25 H 1.09003 * 109.47243 * 300.00141 * 4 3 2 26 26 H 1.08996 * 109.47066 * 60.00390 * 4 3 2 27 27 H 1.09001 * 109.46824 * 306.04499 * 5 3 2 28 28 H 1.08993 * 109.47488 * 66.04925 * 5 3 2 29 29 H 1.09000 * 109.46947 * 186.05516 * 5 3 2 30 30 H 1.08996 * 110.90926 * 273.78518 * 8 6 3 31 31 H 1.09003 * 110.91167 * 37.35917 * 8 6 3 32 32 H 1.08997 * 110.49291 * 220.44228 * 9 8 6 33 33 H 1.09001 * 110.48467 * 97.79660 * 9 8 6 34 34 H 0.96998 * 119.99985 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0646 -1.2493 6 6 3.5355 1.1846 0.0006 7 1 3.9975 2.1714 0.0282 8 6 4.0176 0.3227 1.1953 9 6 5.3849 -0.1976 0.6889 10 6 5.2985 -0.0574 -0.8432 11 1 6.0558 0.6424 -1.1970 12 6 5.5001 -1.4020 -1.4931 13 1 5.6848 -2.2741 -0.8834 14 6 5.4431 -1.5199 -2.8656 15 7 5.6136 -2.6943 -3.4325 16 14 5.1235 -0.0115 -3.9202 17 1 6.4164 0.6259 -4.2772 18 1 4.4119 -0.4155 -5.1593 19 1 4.2881 0.9544 -3.1621 20 8 3.9873 0.4436 -1.1532 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 2.0019 3.0606 1.2490 25 1 0.4722 2.1509 1.2491 26 1 1.8804 1.5238 2.1392 27 1 1.7850 1.4723 -2.1360 28 1 0.4852 2.2448 -1.1969 29 1 2.0849 3.0176 -1.3052 30 1 4.1407 0.9326 2.0902 31 1 3.3311 -0.5033 1.3811 32 1 5.5234 -1.2417 0.9692 33 1 6.1958 0.4150 1.0830 34 1 5.5732 -2.7773 -4.3980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307126984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:29 Heat of formation + Delta-G solvation = -115.206152 kcal Electronic energy + Delta-G solvation = -15621.474881 eV Core-core repulsion = 13132.728918 eV Total energy + Delta-G solvation = -2488.745963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72667 -38.79442 -34.82914 -33.74588 -32.69663 -30.30355 -28.20078 -27.86817 -26.02329 -23.27503 -21.66425 -20.73854 -19.19284 -17.73938 -16.94723 -16.54902 -16.15818 -15.95994 -15.59793 -14.74883 -14.58181 -14.30704 -14.01995 -13.68334 -13.26888 -13.19677 -12.85523 -12.81982 -12.59556 -12.23858 -12.09331 -11.90135 -11.66588 -11.46225 -11.25571 -11.05796 -10.68995 -10.37147 -10.02762 -8.32725 -6.43691 1.35349 1.39132 1.68916 2.44498 2.91535 2.98289 3.43342 3.77281 4.00237 4.12512 4.23920 4.26691 4.48338 4.50943 4.57345 4.60295 4.68081 4.71839 4.77799 4.89658 4.92890 5.04021 5.08667 5.15649 5.22671 5.35907 5.42142 5.49001 5.60837 6.23051 6.42439 6.54166 6.76078 7.32212 8.82070 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032738 B = 0.011706 C = 0.010577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.081401 B = 2391.424537 C = 2646.541616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.398 6.398 3 C 0.112 3.888 4 C -0.167 4.167 5 C -0.170 4.170 6 C 0.066 3.934 7 H 0.087 0.913 8 C -0.129 4.129 9 C -0.135 4.135 10 C 0.165 3.835 11 H 0.027 0.973 12 C -0.527 4.527 13 H 0.034 0.966 14 C 0.022 3.978 15 N -0.945 5.945 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.296 1.296 19 H -0.209 1.209 20 O -0.385 6.385 21 H 0.063 0.937 22 H 0.044 0.956 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 13.605 9.317 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.318 6.318 3 C 0.073 3.927 4 C -0.224 4.224 5 C -0.227 4.227 6 C 0.009 3.991 7 H 0.104 0.896 8 C -0.166 4.166 9 C -0.173 4.173 10 C 0.109 3.891 11 H 0.044 0.956 12 C -0.565 4.565 13 H 0.052 0.948 14 C -0.177 4.177 15 N -0.585 5.585 16 Si 0.761 3.239 17 H -0.200 1.200 18 H -0.222 1.222 19 H -0.131 1.131 20 O -0.306 6.306 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.662 13.321 8.989 18.751 hybrid contribution 0.088 -0.179 -0.821 0.845 sum -9.574 13.142 8.168 18.196 Atomic orbital electron populations 1.22910 0.80874 1.02943 1.00865 1.88105 1.20486 1.28120 1.95112 1.21629 0.91578 0.83492 0.95988 1.22323 1.02703 1.01095 0.96254 1.22308 1.02144 1.00668 0.97599 1.23350 0.92868 0.95907 0.86981 0.89571 1.22955 0.95663 0.99698 0.98303 1.22809 0.98296 1.01042 0.95138 1.20564 0.82607 0.92358 0.93598 0.95571 1.21461 1.48659 0.94191 0.92166 0.94791 1.25985 0.92651 0.99233 0.99809 1.70075 1.51237 1.26077 1.11130 0.85945 0.79258 0.81401 0.77256 1.19998 1.22248 1.13094 1.89231 1.34339 1.70409 1.36586 0.91842 0.93721 0.90024 0.89618 0.90454 0.91368 0.94475 0.90539 0.90446 0.88158 0.92041 0.93147 0.89882 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.21 113.37 1.16 1.67 16 2 O -0.40 -14.26 9.28 -141.20 -1.31 -15.57 16 3 C 0.11 3.40 0.63 -10.79 -0.01 3.39 16 4 C -0.17 -3.41 8.08 71.98 0.58 -2.83 16 5 C -0.17 -4.84 7.87 71.98 0.57 -4.27 16 6 C 0.07 2.36 2.62 31.28 0.08 2.44 16 7 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 8 C -0.13 -4.38 5.62 31.89 0.18 -4.20 16 9 C -0.14 -5.46 6.63 31.58 0.21 -5.25 16 10 C 0.16 8.18 2.72 30.22 0.08 8.27 16 11 H 0.03 1.28 7.57 -2.38 -0.02 1.27 16 12 C -0.53 -32.39 9.36 25.60 0.24 -32.15 16 13 H 0.03 2.29 7.58 -2.91 -0.02 2.26 16 14 C 0.02 1.35 5.47 84.66 0.46 1.81 16 15 N -0.95 -62.46 13.96 21.45 0.30 -62.16 16 16 Si 0.94 47.82 27.02 68.60 1.85 49.67 16 17 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 19 H -0.21 -10.11 5.37 99.48 0.53 -9.58 16 20 O -0.39 -18.41 7.34 -141.20 -1.04 -19.45 16 21 H 0.06 1.25 6.42 -2.39 -0.02 1.24 16 22 H 0.04 1.07 6.56 -2.38 -0.02 1.05 16 23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 1.31 6.54 -2.39 -0.02 1.30 16 26 H 0.07 1.39 7.36 -2.39 -0.02 1.37 16 27 H 0.04 1.32 7.95 -2.39 -0.02 1.30 16 28 H 0.08 1.74 6.88 -2.39 -0.02 1.72 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.10 2.55 8.06 -2.39 -0.02 2.53 16 31 H 0.06 2.32 7.26 -2.39 -0.02 2.31 16 32 H 0.05 2.22 7.40 -2.39 -0.02 2.21 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -74.52 264.98 4.25 -70.27 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.89 Total: 8.35 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.55 Total: -31.12 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.30 Total: -62.16 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -2.35 Total: -35.02 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.85 Total: 49.67 kcal Total: -74.52 4.25 -70.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.934 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds