Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00315 * 2 1 4 4 C 1.52997 * 109.46947 * 59.99872 * 3 2 1 5 5 C 1.53002 * 109.46994 * 300.00112 * 3 2 1 6 6 C 1.52996 * 109.47030 * 180.02562 * 3 2 1 7 7 H 1.09003 * 110.27341 * 182.09223 * 6 3 2 8 8 C 1.54940 * 110.31135 * 60.00127 * 6 3 2 9 9 C 1.55309 * 100.94026 * 204.64100 * 8 6 3 10 10 C 1.54379 * 102.25260 * 34.13071 * 9 8 6 11 11 H 1.09003 * 109.83114 * 98.25399 * 10 9 8 12 12 C 1.50706 * 109.83191 * 219.12681 * 10 9 8 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00434 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 10 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 O 1.43237 * 107.59266 * 338.64279 * 10 9 8 21 21 H 1.09001 * 109.47737 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47064 * 300.00089 * 1 2 3 23 23 H 1.09003 * 109.47091 * 59.99698 * 1 2 3 24 24 H 1.09005 * 109.47122 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47476 * 299.99992 * 4 3 2 26 26 H 1.09004 * 109.47253 * 60.00085 * 4 3 2 27 27 H 1.08996 * 109.47103 * 299.99867 * 5 3 2 28 28 H 1.09001 * 109.47211 * 60.00142 * 5 3 2 29 29 H 1.09005 * 109.46843 * 179.97438 * 5 3 2 30 30 H 1.08991 * 111.12585 * 86.72273 * 8 6 3 31 31 H 1.08997 * 111.12708 * 322.55258 * 8 6 3 32 32 H 1.09003 * 110.84553 * 275.93793 * 9 8 6 33 33 H 1.08998 * 110.84802 * 152.32209 * 9 8 6 34 34 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1845 -0.0006 7 1 3.9927 2.1733 0.0367 8 6 4.0137 0.4180 -1.2594 9 6 5.3762 -0.1398 -0.7649 10 6 5.0955 -0.4141 0.7282 11 1 4.8643 -1.4694 0.8732 12 6 6.2995 -0.0369 1.5525 13 1 7.1809 0.3597 1.0707 14 6 6.2753 -0.1971 2.9216 15 7 5.1996 -0.6742 3.5089 16 14 7.7673 0.2710 3.9434 17 1 8.6646 -0.9047 4.0767 18 1 8.4976 1.3778 3.2748 19 1 7.3259 0.7122 5.2909 20 8 3.9729 0.3884 1.1122 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.0026 3.0603 1.2495 25 1 0.4722 2.1508 1.2492 26 1 1.8804 1.5237 2.1392 27 1 1.8804 1.5238 -2.1392 28 1 0.4722 2.1508 -1.2492 29 1 2.0019 3.0606 -1.2490 30 1 4.1490 1.0943 -2.1033 31 1 3.3269 -0.3899 -1.5119 32 1 6.1648 0.6036 -0.8812 33 1 5.6306 -1.0618 -1.2876 34 1 4.4247 -0.9171 2.9784 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307126985.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -104.371901 kcal Electronic energy + Delta-G solvation = -15539.641948 eV Core-core repulsion = 13051.365793 eV Total energy + Delta-G solvation = -2488.276155 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.25371 -37.20601 -33.07742 -31.97517 -30.95961 -27.90170 -27.05463 -26.44816 -24.04358 -21.49214 -20.36712 -19.39335 -16.88673 -16.17855 -15.84355 -14.85145 -14.66155 -13.88318 -13.66174 -13.32271 -13.20222 -12.77148 -12.26411 -12.19496 -11.84781 -11.71666 -11.37794 -11.12149 -10.84832 -10.70414 -10.55090 -10.24750 -10.03512 -9.82136 -9.72962 -9.16258 -8.98511 -8.34706 -7.71055 -6.23836 -4.01673 3.47845 3.52253 3.67992 4.13731 4.61044 4.76589 5.08565 5.25451 5.41844 5.52703 5.55898 5.58693 5.64081 5.69580 5.80596 5.83339 5.92422 6.03660 6.15345 6.18924 6.31445 6.35153 6.53787 6.61048 6.71439 6.75376 6.87429 7.53838 7.65559 8.24716 8.39119 8.71931 9.00499 9.82395 11.17828 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041701 B = 0.009331 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.293377 B = 3000.154986 C = 3247.129890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.362 6.362 3 C 0.113 3.887 4 C -0.171 4.171 5 C -0.176 4.176 6 C 0.099 3.901 7 H 0.064 0.936 8 C -0.150 4.150 9 C -0.138 4.138 10 C 0.191 3.809 11 H 0.029 0.971 12 C -0.620 4.620 13 H 0.050 0.950 14 C 0.032 3.968 15 N -0.893 5.893 16 Si 1.069 2.931 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.285 1.285 20 O -0.365 6.365 21 H 0.079 0.921 22 H 0.040 0.960 23 H 0.036 0.964 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 4.564 -8.445 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.280 6.280 3 C 0.074 3.926 4 C -0.229 4.229 5 C -0.233 4.233 6 C 0.040 3.960 7 H 0.081 0.919 8 C -0.187 4.187 9 C -0.175 4.175 10 C 0.136 3.864 11 H 0.047 0.953 12 C -0.658 4.658 13 H 0.069 0.931 14 C -0.177 4.177 15 N -0.528 5.528 16 Si 0.898 3.102 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.210 1.210 20 O -0.285 6.285 21 H 0.097 0.903 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.912 4.446 -6.695 10.600 hybrid contribution -0.711 0.255 -1.850 1.998 sum -7.623 4.701 -8.545 12.378 Atomic orbital electron populations 1.22731 0.82970 1.02026 0.99478 1.88096 1.18090 1.27068 1.94792 1.21691 0.94034 0.83250 0.93665 1.22304 1.00070 1.00789 0.99708 1.22402 1.01262 1.00958 0.98692 1.22598 0.89567 0.95692 0.88139 0.91858 1.23220 0.98102 1.00028 0.97374 1.23072 0.95952 1.00079 0.98434 1.20411 0.85166 0.91136 0.89723 0.95329 1.22279 0.99276 1.49552 0.94686 0.93148 1.25787 1.02127 0.93795 0.95958 1.70607 1.04597 1.37628 1.39999 0.83572 0.74572 0.76252 0.75816 1.21500 1.21597 1.21026 1.88648 1.50005 1.57368 1.32435 0.90277 0.94117 0.94578 0.92027 0.93177 0.90407 0.91704 0.92391 0.91622 0.92056 0.90706 0.91695 0.92401 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.21 101.05 1.03 1.38 16 2 O -0.36 -6.79 9.40 -46.56 -0.44 -7.22 16 3 C 0.11 1.99 0.62 -90.62 -0.06 1.93 16 4 C -0.17 -2.90 8.15 37.16 0.30 -2.60 16 5 C -0.18 -2.38 8.02 37.16 0.30 -2.09 16 6 C 0.10 2.06 2.75 -25.71 -0.07 1.99 16 7 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 8 C -0.15 -2.84 5.36 -24.48 -0.13 -2.97 16 9 C -0.14 -3.01 6.53 -24.78 -0.16 -3.17 16 10 C 0.19 5.15 2.94 -27.16 -0.08 5.07 16 11 H 0.03 0.84 7.99 -51.93 -0.41 0.43 16 12 C -0.62 -18.25 8.75 -34.44 -0.30 -18.55 16 13 H 0.05 1.45 7.52 -52.49 -0.39 1.06 16 14 C 0.03 0.94 5.41 -17.82 -0.10 0.84 16 15 N -0.89 -28.34 13.55 55.43 0.75 -27.59 16 16 Si 1.07 26.01 29.90 -169.99 -5.08 20.93 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 O -0.36 -9.66 8.94 -46.56 -0.42 -10.08 16 21 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 22 H 0.04 0.54 6.42 -51.93 -0.33 0.21 16 23 H 0.04 0.43 6.42 -51.93 -0.33 0.09 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 26 H 0.08 1.58 7.84 -51.93 -0.41 1.17 16 27 H 0.06 0.86 7.18 -51.93 -0.37 0.49 16 28 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 31 H 0.07 1.42 7.41 -51.93 -0.38 1.04 16 32 H 0.06 1.41 7.65 -51.93 -0.40 1.02 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.28 9.13 6.55 -40.82 -0.27 8.86 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -32.72 268.67 -5.71 -38.43 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.31 Total: -0.34 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 0.74 Total: -18.17 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.75 Total: -27.59 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.85 Total: -17.31 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.93 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.72 -5.71 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126985.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.942 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds