Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00315 * 2 1 4 4 C 1.52997 * 109.46947 * 59.99872 * 3 2 1 5 5 C 1.53002 * 109.46994 * 300.00112 * 3 2 1 6 6 C 1.52996 * 109.47030 * 180.02562 * 3 2 1 7 7 H 1.09003 * 110.27341 * 182.09223 * 6 3 2 8 8 C 1.54940 * 110.31135 * 60.00127 * 6 3 2 9 9 C 1.55309 * 100.94026 * 204.64100 * 8 6 3 10 10 C 1.54379 * 102.25260 * 34.13071 * 9 8 6 11 11 H 1.09003 * 109.83114 * 98.25399 * 10 9 8 12 12 C 1.50706 * 109.83191 * 219.12681 * 10 9 8 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00434 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 10 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 O 1.43237 * 107.59266 * 338.64279 * 10 9 8 21 21 H 1.09001 * 109.47737 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47064 * 300.00089 * 1 2 3 23 23 H 1.09003 * 109.47091 * 59.99698 * 1 2 3 24 24 H 1.09005 * 109.47122 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47476 * 299.99992 * 4 3 2 26 26 H 1.09004 * 109.47253 * 60.00085 * 4 3 2 27 27 H 1.08996 * 109.47103 * 299.99867 * 5 3 2 28 28 H 1.09001 * 109.47211 * 60.00142 * 5 3 2 29 29 H 1.09005 * 109.46843 * 179.97438 * 5 3 2 30 30 H 1.08991 * 111.12585 * 86.72273 * 8 6 3 31 31 H 1.08997 * 111.12708 * 322.55258 * 8 6 3 32 32 H 1.09003 * 110.84553 * 275.93793 * 9 8 6 33 33 H 1.08998 * 110.84802 * 152.32209 * 9 8 6 34 34 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1845 -0.0006 7 1 3.9927 2.1733 0.0367 8 6 4.0137 0.4180 -1.2594 9 6 5.3762 -0.1398 -0.7649 10 6 5.0955 -0.4141 0.7282 11 1 4.8643 -1.4694 0.8732 12 6 6.2995 -0.0369 1.5525 13 1 7.1809 0.3597 1.0707 14 6 6.2753 -0.1971 2.9216 15 7 5.1996 -0.6742 3.5089 16 14 7.7673 0.2710 3.9434 17 1 8.6646 -0.9047 4.0767 18 1 8.4976 1.3778 3.2748 19 1 7.3259 0.7122 5.2909 20 8 3.9729 0.3884 1.1122 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.0026 3.0603 1.2495 25 1 0.4722 2.1508 1.2492 26 1 1.8804 1.5237 2.1392 27 1 1.8804 1.5238 -2.1392 28 1 0.4722 2.1508 -1.2492 29 1 2.0019 3.0606 -1.2490 30 1 4.1490 1.0943 -2.1033 31 1 3.3269 -0.3899 -1.5119 32 1 6.1648 0.6036 -0.8812 33 1 5.6306 -1.0618 -1.2876 34 1 4.4247 -0.9171 2.9784 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307126985.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -126.480263 kcal Electronic energy + Delta-G solvation = -15540.600638 eV Core-core repulsion = 13051.365793 eV Total energy + Delta-G solvation = -2489.234846 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.80068 -38.83426 -35.00455 -33.66184 -32.74982 -29.66386 -28.24154 -27.77987 -26.04078 -23.21098 -22.23253 -20.80346 -19.06196 -17.64882 -17.44823 -16.24966 -16.02864 -15.70336 -15.48935 -15.32310 -14.55823 -14.13382 -13.93591 -13.56541 -13.31372 -13.19835 -12.88998 -12.62443 -12.53333 -12.29228 -12.18744 -11.93226 -11.90608 -11.59244 -11.21120 -10.99020 -10.59718 -10.43162 -9.78145 -8.61221 -6.39980 1.50692 1.61256 1.78435 2.57850 2.88304 3.04690 3.41079 3.70789 3.87731 3.99183 4.16523 4.23979 4.43231 4.46948 4.51854 4.58935 4.61218 4.66941 4.73002 4.84402 4.88023 4.89944 5.01379 5.08389 5.14318 5.19920 5.37987 5.52826 5.99247 6.12045 6.41062 6.58266 6.77318 7.55416 8.78473 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041701 B = 0.009331 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.293377 B = 3000.154986 C = 3247.129890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.399 6.399 3 C 0.112 3.888 4 C -0.168 4.168 5 C -0.167 4.167 6 C 0.081 3.919 7 H 0.064 0.936 8 C -0.132 4.132 9 C -0.133 4.133 10 C 0.182 3.818 11 H -0.011 1.011 12 C -0.635 4.635 13 H 0.052 0.948 14 C -0.025 4.025 15 N -0.922 5.922 16 Si 1.120 2.880 17 H -0.270 1.270 18 H -0.269 1.269 19 H -0.284 1.284 20 O -0.396 6.396 21 H 0.087 0.913 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 6.022 -10.106 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.319 6.319 3 C 0.073 3.927 4 C -0.225 4.225 5 C -0.224 4.224 6 C 0.023 3.977 7 H 0.081 0.919 8 C -0.169 4.169 9 C -0.170 4.170 10 C 0.126 3.874 11 H 0.007 0.993 12 C -0.673 4.673 13 H 0.071 0.929 14 C -0.225 4.225 15 N -0.557 5.557 16 Si 0.941 3.059 17 H -0.195 1.195 18 H -0.194 1.194 19 H -0.210 1.210 20 O -0.317 6.317 21 H 0.106 0.894 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.172 5.906 -8.389 12.518 hybrid contribution -0.706 -0.209 -1.375 1.560 sum -7.878 5.697 -9.764 13.778 Atomic orbital electron populations 1.22950 0.80617 1.03227 1.00907 1.88035 1.20772 1.27985 1.95139 1.21696 0.91693 0.83525 0.95798 1.22272 1.02003 1.00528 0.97730 1.22333 1.02829 1.00964 0.96263 1.23003 0.92383 0.94969 0.87329 0.91877 1.23142 0.95777 1.00312 0.97656 1.22981 0.97881 1.01043 0.95128 1.20299 0.84883 0.89292 0.92894 0.99342 1.22702 1.00325 1.48848 0.95380 0.92934 1.27430 1.04131 0.92951 0.98026 1.70752 1.05014 1.40210 1.39771 0.82936 0.71493 0.77228 0.74240 1.19504 1.19399 1.21021 1.88570 1.49719 1.57948 1.35422 0.89426 0.93862 0.91756 0.90953 0.90272 0.95037 0.91032 0.90106 0.90122 0.88031 0.90741 0.91473 0.91037 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.21 113.37 1.16 1.65 16 2 O -0.40 -14.67 9.40 -138.15 -1.30 -15.97 16 3 C 0.11 3.77 0.62 -10.80 -0.01 3.76 16 4 C -0.17 -5.58 8.15 71.98 0.59 -4.99 16 5 C -0.17 -3.87 8.02 71.98 0.58 -3.30 16 6 C 0.08 3.33 2.75 31.26 0.09 3.42 16 7 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 8 C -0.13 -4.74 5.36 32.05 0.17 -4.57 16 9 C -0.13 -5.73 6.53 31.86 0.21 -5.52 16 10 C 0.18 10.15 2.94 30.32 0.09 10.24 16 11 H -0.01 -0.68 7.99 -2.39 -0.02 -0.70 16 12 C -0.64 -38.17 8.75 25.60 0.22 -37.94 16 13 H 0.05 3.05 7.52 -2.91 -0.02 3.03 16 14 C -0.02 -1.50 5.41 84.65 0.46 -1.04 16 15 N -0.92 -60.74 13.55 21.45 0.29 -60.45 16 16 Si 1.12 52.56 29.90 68.60 2.05 54.61 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 20 O -0.40 -21.74 8.94 -138.15 -1.23 -22.98 16 21 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.04 1.08 6.42 -2.39 -0.02 1.06 16 23 H 0.06 1.29 6.42 -2.39 -0.02 1.28 16 24 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 25 H 0.08 2.10 6.54 -2.39 -0.02 2.09 16 26 H 0.03 1.31 7.84 -2.38 -0.02 1.29 16 27 H 0.07 1.59 7.18 -2.39 -0.02 1.57 16 28 H 0.08 1.53 6.54 -2.39 -0.02 1.51 16 29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.10 2.86 8.04 -2.39 -0.02 2.84 16 31 H 0.07 2.70 7.41 -2.39 -0.02 2.69 16 32 H 0.07 2.84 7.65 -2.39 -0.02 2.83 16 33 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.26 18.01 6.55 -92.71 -0.61 17.40 16 Total: -1.00 -74.14 268.67 4.58 -69.55 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.22 Total: 13.52 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 3.55 Total: -38.30 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.29 Total: -60.45 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.53 Total: -38.94 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 2.05 Total: 54.61 kcal Total: -74.14 4.58 -69.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126985.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.929 kcal (2) G-P(sol) polarization free energy of solvation -74.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds