Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99822 * 2 1 4 4 C 1.52999 * 109.47350 * 59.99907 * 3 2 1 5 5 C 1.52999 * 109.46971 * 300.00126 * 3 2 1 6 6 C 1.53002 * 109.47183 * 180.02562 * 3 2 1 7 7 H 1.09000 * 110.27567 * 179.45290 * 6 3 2 8 8 C 1.54947 * 110.31024 * 301.54090 * 6 3 2 9 9 C 1.55409 * 100.89479 * 155.28576 * 8 6 3 10 10 C 1.54379 * 102.31159 * 325.99623 * 9 8 6 11 11 H 1.09003 * 109.83046 * 261.76844 * 10 9 8 12 12 C 1.50695 * 109.90988 * 140.83874 * 10 9 8 13 13 H 1.08004 * 120.00131 * 0.36581 * 12 10 9 14 14 C 1.37885 * 120.00327 * 180.36740 * 12 10 9 15 15 N 1.31511 * 119.99638 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 119.99919 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47433 * 90.00175 * 16 14 12 18 18 H 1.48509 * 109.47057 * 209.99679 * 16 14 12 19 19 H 1.48492 * 109.47388 * 329.99695 * 16 14 12 20 20 O 1.43241 * 107.59127 * 21.28051 * 10 9 8 21 21 H 1.09001 * 109.47175 * 299.99926 * 1 2 3 22 22 H 1.08996 * 109.47324 * 60.00297 * 1 2 3 23 23 H 1.09002 * 109.46800 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47140 * 300.00340 * 4 3 2 25 25 H 1.09002 * 109.46600 * 60.00133 * 4 3 2 26 26 H 1.08994 * 109.47038 * 179.97438 * 4 3 2 27 27 H 1.09006 * 109.47310 * 186.27713 * 5 3 2 28 28 H 1.09008 * 109.47110 * 306.27529 * 5 3 2 29 29 H 1.08994 * 109.47341 * 66.27284 * 5 3 2 30 30 H 1.08992 * 111.12581 * 273.28462 * 8 6 3 31 31 H 1.09004 * 111.12045 * 37.44297 * 8 6 3 32 32 H 1.08993 * 110.88595 * 207.75715 * 9 8 6 33 33 H 1.09004 * 110.93096 * 84.24906 * 9 8 6 34 34 H 0.97002 * 119.99978 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5586 2.0647 -1.2492 6 6 3.5354 1.1848 -0.0006 7 1 3.9926 2.1742 -0.0104 8 6 4.0121 0.3843 1.2375 9 6 5.3751 -0.1610 0.7277 10 6 5.0968 -0.3919 -0.7731 11 1 4.8643 -1.4423 -0.9488 12 6 6.3013 0.0077 -1.5858 13 1 7.1852 0.3839 -1.0922 14 6 6.2750 -0.1070 -2.9596 15 7 5.1989 -0.5655 -3.5607 16 14 7.7678 0.3890 -3.9669 17 1 8.6636 -0.7834 -4.1347 18 1 7.3271 0.8701 -5.3011 19 1 8.4994 1.4747 -3.2662 20 8 3.9746 0.4213 -1.1354 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.4721 2.1508 1.2492 25 1 1.8804 1.5239 2.1392 26 1 2.0024 3.0604 1.2494 27 1 2.0875 3.0161 -1.3073 28 1 1.7811 1.4707 -2.1357 29 1 0.4856 2.2483 -1.1949 30 1 4.1461 1.0374 2.0997 31 1 3.3250 -0.4302 1.4670 32 1 5.6288 -1.0978 1.2238 33 1 6.1660 0.5761 0.8666 34 1 5.1805 -0.6466 -4.5271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307126987.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = -98.093561 kcal Electronic energy + Delta-G solvation = -15488.039961 eV Core-core repulsion = 13000.036055 eV Total energy + Delta-G solvation = -2488.003906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10172 -37.00920 -32.87672 -31.94328 -30.76267 -28.05436 -26.96088 -26.46694 -24.30293 -21.42914 -20.04067 -19.28589 -16.40278 -16.05288 -15.67839 -14.75527 -14.62120 -14.39316 -13.69280 -13.15085 -12.71418 -12.59392 -12.11889 -12.06005 -11.83098 -11.65603 -11.50495 -11.00919 -10.84508 -10.71975 -10.48951 -10.25540 -10.12477 -9.67064 -9.65167 -9.08639 -9.05119 -8.43887 -7.67946 -5.88191 -4.02364 3.35287 3.41817 3.44919 4.24334 4.49958 4.89940 5.18548 5.36080 5.43419 5.56290 5.66573 5.68651 5.73709 5.78673 5.88920 5.94157 6.01806 6.12719 6.25690 6.29713 6.42684 6.48288 6.67001 6.75012 6.84736 6.88567 7.00079 7.74298 7.80236 7.98796 8.40576 8.73872 9.16659 9.68634 11.17851 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041545 B = 0.009296 C = 0.008579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.810515 B = 3011.280459 C = 3263.188282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.114 3.886 4 C -0.175 4.175 5 C -0.169 4.169 6 C 0.093 3.907 7 H 0.061 0.939 8 C -0.149 4.149 9 C -0.145 4.145 10 C 0.208 3.792 11 H 0.037 0.963 12 C -0.545 4.545 13 H 0.057 0.943 14 C 0.079 3.921 15 N -0.861 5.861 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.344 6.344 21 H 0.034 0.966 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 4.098 7.972 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.279 6.279 3 C 0.075 3.925 4 C -0.233 4.233 5 C -0.226 4.226 6 C 0.034 3.966 7 H 0.078 0.922 8 C -0.187 4.187 9 C -0.183 4.183 10 C 0.153 3.847 11 H 0.054 0.946 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.127 4.127 15 N -0.497 5.497 16 Si 0.714 3.286 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.263 6.263 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.700 3.883 7.586 11.485 hybrid contribution 0.651 0.568 -0.414 0.958 sum -7.049 4.451 7.172 10.997 Atomic orbital electron populations 1.22702 0.83141 1.01914 0.99353 1.88108 1.17918 1.27100 1.94764 1.21678 0.94228 0.83157 0.93480 1.22399 1.01134 1.00954 0.98807 1.22278 0.99580 1.00999 0.99751 1.22637 0.89499 0.95994 0.88508 0.92159 1.23226 0.98125 0.99951 0.97362 1.23209 0.95886 1.00005 0.99205 1.20242 0.84883 0.91675 0.87909 0.94564 1.21423 0.98930 1.45957 0.91964 0.92449 1.25056 0.95449 0.94146 0.98043 1.70061 1.26999 1.43559 1.09095 0.86711 0.83277 0.78858 0.79730 1.20636 1.21198 1.19913 1.88776 1.49583 1.58105 1.29813 0.94705 0.94235 0.90375 0.92511 0.91770 0.91698 0.92051 0.90320 0.93570 0.92319 0.90716 0.92465 0.91907 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.21 101.05 1.03 1.40 16 2 O -0.36 -6.89 9.35 -45.32 -0.42 -7.31 16 3 C 0.11 2.04 0.62 -90.62 -0.06 1.98 16 4 C -0.18 -2.43 8.04 37.16 0.30 -2.13 16 5 C -0.17 -2.92 7.87 37.16 0.29 -2.63 16 6 C 0.09 1.95 2.75 -25.70 -0.07 1.88 16 7 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 8 C -0.15 -2.85 5.45 -24.42 -0.13 -2.98 16 9 C -0.15 -3.16 6.53 -24.73 -0.16 -3.32 16 10 C 0.21 5.63 3.36 -27.16 -0.09 5.54 16 11 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 12 C -0.55 -15.77 8.75 -34.44 -0.30 -16.08 16 13 H 0.06 1.61 7.52 -52.48 -0.39 1.22 16 14 C 0.08 2.30 5.41 -17.82 -0.10 2.20 16 15 N -0.86 -26.38 12.91 55.43 0.72 -25.67 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 O -0.34 -9.24 9.67 -45.32 -0.44 -9.68 16 21 H 0.03 0.42 6.42 -51.93 -0.33 0.09 16 22 H 0.04 0.54 6.56 -51.93 -0.34 0.20 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16 25 H 0.06 0.86 7.24 -51.93 -0.38 0.49 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.62 7.97 -51.92 -0.41 1.21 16 29 H 0.05 0.66 6.89 -51.93 -0.36 0.31 16 30 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.07 1.44 7.35 -51.93 -0.38 1.06 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.34 7.66 -51.93 -0.40 0.94 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -32.00 271.14 -5.79 -37.79 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.42 Total: -1.96 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 0.71 Total: -14.13 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.72 Total: -25.67 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.86 Total: -16.99 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.00 -5.79 -37.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126987.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.300 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds