Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99822 * 2 1 4 4 C 1.52999 * 109.47350 * 59.99907 * 3 2 1 5 5 C 1.52999 * 109.46971 * 300.00126 * 3 2 1 6 6 C 1.53002 * 109.47183 * 180.02562 * 3 2 1 7 7 H 1.09000 * 110.27567 * 179.45290 * 6 3 2 8 8 C 1.54947 * 110.31024 * 301.54090 * 6 3 2 9 9 C 1.55409 * 100.89479 * 155.28576 * 8 6 3 10 10 C 1.54379 * 102.31159 * 325.99623 * 9 8 6 11 11 H 1.09003 * 109.83046 * 261.76844 * 10 9 8 12 12 C 1.50695 * 109.90988 * 140.83874 * 10 9 8 13 13 H 1.08004 * 120.00131 * 0.36581 * 12 10 9 14 14 C 1.37885 * 120.00327 * 180.36740 * 12 10 9 15 15 N 1.31511 * 119.99638 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 119.99919 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47433 * 90.00175 * 16 14 12 18 18 H 1.48509 * 109.47057 * 209.99679 * 16 14 12 19 19 H 1.48492 * 109.47388 * 329.99695 * 16 14 12 20 20 O 1.43241 * 107.59127 * 21.28051 * 10 9 8 21 21 H 1.09001 * 109.47175 * 299.99926 * 1 2 3 22 22 H 1.08996 * 109.47324 * 60.00297 * 1 2 3 23 23 H 1.09002 * 109.46800 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47140 * 300.00340 * 4 3 2 25 25 H 1.09002 * 109.46600 * 60.00133 * 4 3 2 26 26 H 1.08994 * 109.47038 * 179.97438 * 4 3 2 27 27 H 1.09006 * 109.47310 * 186.27713 * 5 3 2 28 28 H 1.09008 * 109.47110 * 306.27529 * 5 3 2 29 29 H 1.08994 * 109.47341 * 66.27284 * 5 3 2 30 30 H 1.08992 * 111.12581 * 273.28462 * 8 6 3 31 31 H 1.09004 * 111.12045 * 37.44297 * 8 6 3 32 32 H 1.08993 * 110.88595 * 207.75715 * 9 8 6 33 33 H 1.09004 * 110.93096 * 84.24906 * 9 8 6 34 34 H 0.97002 * 119.99978 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5586 2.0647 -1.2492 6 6 3.5354 1.1848 -0.0006 7 1 3.9926 2.1742 -0.0104 8 6 4.0121 0.3843 1.2375 9 6 5.3751 -0.1610 0.7277 10 6 5.0968 -0.3919 -0.7731 11 1 4.8643 -1.4423 -0.9488 12 6 6.3013 0.0077 -1.5858 13 1 7.1852 0.3839 -1.0922 14 6 6.2750 -0.1070 -2.9596 15 7 5.1989 -0.5655 -3.5607 16 14 7.7678 0.3890 -3.9669 17 1 8.6636 -0.7834 -4.1347 18 1 7.3271 0.8701 -5.3011 19 1 8.4994 1.4747 -3.2662 20 8 3.9746 0.4213 -1.1354 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.4721 2.1508 1.2492 25 1 1.8804 1.5239 2.1392 26 1 2.0024 3.0604 1.2494 27 1 2.0875 3.0161 -1.3073 28 1 1.7811 1.4707 -2.1357 29 1 0.4856 2.2483 -1.1949 30 1 4.1461 1.0374 2.0997 31 1 3.3250 -0.4302 1.4670 32 1 5.6288 -1.0978 1.2238 33 1 6.1660 0.5761 0.8666 34 1 5.1805 -0.6466 -4.5271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307126987.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = -119.653731 kcal Electronic energy + Delta-G solvation = -15488.974880 eV Core-core repulsion = 13000.036055 eV Total energy + Delta-G solvation = -2488.938825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.63702 -38.65049 -34.78892 -33.62670 -32.55772 -29.87151 -28.17808 -27.80394 -26.19900 -23.10066 -21.91424 -20.71792 -18.56425 -17.54150 -17.26231 -16.57260 -16.12723 -15.91683 -15.38923 -14.70070 -14.32234 -14.03301 -13.78683 -13.70904 -13.27001 -13.09758 -12.84652 -12.78030 -12.42434 -12.37640 -12.18729 -12.10606 -11.80131 -11.44924 -11.12936 -11.03400 -10.63390 -10.36015 -9.70443 -8.09141 -6.32055 1.39141 1.40945 1.51577 2.41773 2.96954 3.08640 3.51735 3.81747 4.00428 4.08896 4.27376 4.35676 4.51153 4.58242 4.63636 4.69627 4.70180 4.75529 4.82277 4.89757 4.95153 5.02041 5.14087 5.18356 5.22713 5.34425 5.46549 5.65400 5.79471 6.22422 6.49559 6.65724 7.12517 7.45414 8.97403 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041545 B = 0.009296 C = 0.008579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.810515 B = 3011.280459 C = 3263.188282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.398 6.398 3 C 0.112 3.888 4 C -0.166 4.166 5 C -0.165 4.165 6 C 0.076 3.924 7 H 0.062 0.938 8 C -0.132 4.132 9 C -0.139 4.139 10 C 0.200 3.800 11 H -0.009 1.009 12 C -0.565 4.565 13 H 0.062 0.938 14 C 0.020 3.980 15 N -0.903 5.903 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.264 1.264 20 O -0.380 6.380 21 H 0.063 0.937 22 H 0.041 0.959 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 5.550 9.541 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.318 6.318 3 C 0.073 3.927 4 C -0.223 4.223 5 C -0.222 4.222 6 C 0.017 3.983 7 H 0.080 0.920 8 C -0.169 4.169 9 C -0.177 4.177 10 C 0.144 3.856 11 H 0.009 0.991 12 C -0.602 4.602 13 H 0.080 0.920 14 C -0.181 4.181 15 N -0.540 5.540 16 Si 0.785 3.215 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.188 1.188 20 O -0.299 6.299 21 H 0.081 0.919 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.923 5.341 9.177 13.248 hybrid contribution 0.649 0.095 -0.885 1.101 sum -7.274 5.436 8.293 12.298 Atomic orbital electron populations 1.22919 0.80796 1.03115 1.00765 1.88046 1.20605 1.28054 1.95112 1.21693 0.92017 0.83402 0.95584 1.22323 1.02672 1.00957 0.96387 1.22235 1.01736 1.00341 0.97886 1.23022 0.92192 0.95437 0.87605 0.92033 1.23144 0.95950 1.00094 0.97732 1.23099 0.97730 1.01075 0.95756 1.20114 0.84701 0.89510 0.91268 0.99123 1.21848 0.99868 1.45720 0.92793 0.91998 1.25985 0.98638 0.94064 0.99421 1.70227 1.29461 1.45045 1.09290 0.85550 0.79300 0.78907 0.77761 1.19555 1.20946 1.18788 1.88688 1.49513 1.58672 1.33059 0.91850 0.94044 0.89517 0.90261 0.91070 0.90207 0.91416 0.94866 0.90462 0.88320 0.90946 0.91123 0.91383 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.21 113.37 1.16 1.69 16 2 O -0.40 -14.95 9.35 -139.33 -1.30 -16.26 16 3 C 0.11 3.85 0.62 -10.79 -0.01 3.85 16 4 C -0.17 -3.96 8.04 71.98 0.58 -3.38 16 5 C -0.16 -5.60 7.87 71.98 0.57 -5.03 16 6 C 0.08 3.15 2.75 31.26 0.09 3.23 16 7 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 8 C -0.13 -4.80 5.45 32.09 0.17 -4.63 16 9 C -0.14 -5.97 6.53 31.89 0.21 -5.76 16 10 C 0.20 11.18 3.36 30.31 0.10 11.28 16 11 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 12 C -0.56 -33.41 8.75 25.60 0.22 -33.19 16 13 H 0.06 3.49 7.52 -2.91 -0.02 3.47 16 14 C 0.02 1.22 5.41 84.66 0.46 1.68 16 15 N -0.90 -57.42 12.91 21.45 0.28 -57.15 16 16 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 20 O -0.38 -21.10 9.67 -139.33 -1.35 -22.45 16 21 H 0.06 1.31 6.42 -2.39 -0.02 1.30 16 22 H 0.04 1.07 6.56 -2.39 -0.02 1.05 16 23 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.08 1.55 6.54 -2.39 -0.02 1.53 16 25 H 0.07 1.61 7.24 -2.39 -0.02 1.60 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.03 1.40 7.97 -2.38 -0.02 1.38 16 29 H 0.08 2.08 6.89 -2.39 -0.02 2.06 16 30 H 0.10 2.81 8.05 -2.39 -0.02 2.79 16 31 H 0.07 2.68 7.35 -2.39 -0.02 2.66 16 32 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 33 H 0.07 2.82 7.66 -2.39 -0.02 2.81 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -72.18 271.14 4.26 -67.92 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.06 Total: 10.54 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 3.55 Total: -30.26 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.28 Total: -57.15 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -2.65 Total: -38.71 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -72.18 4.26 -67.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126987.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.729 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds