Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46471 * 2 1 4 4 C 1.50701 * 109.47211 * 60.00494 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27574 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.52990 * 109.47213 * 119.99890 * 2 1 3 13 13 H 1.09005 * 109.47428 * 300.00019 * 12 2 1 14 14 O 1.42906 * 109.47339 * 180.02562 * 12 2 1 15 15 C 1.52996 * 109.47429 * 60.00403 * 12 2 1 16 16 C 1.53000 * 109.47273 * 59.99520 * 15 12 2 17 17 C 1.53004 * 109.47306 * 300.00661 * 16 15 12 18 18 C 1.52997 * 109.47190 * 240.00507 * 2 1 3 19 19 H 1.08995 * 109.47672 * 59.99235 * 18 2 1 20 20 O 1.42898 * 109.47087 * 179.97438 * 18 2 1 21 21 H 1.08995 * 109.47438 * 60.00401 * 1 2 3 22 22 H 1.09004 * 109.46658 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47069 * 299.99541 * 1 2 3 24 24 H 1.09000 * 109.47211 * 299.99520 * 3 2 1 25 25 H 1.09007 * 109.46376 * 180.02562 * 3 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.96698 * 113.99968 * 180.02562 * 14 12 2 28 28 H 1.09006 * 109.46938 * 300.00220 * 15 12 2 29 29 H 1.09000 * 109.47764 * 179.97438 * 15 12 2 30 30 H 1.08998 * 109.47692 * 180.02562 * 16 15 12 31 31 H 1.08998 * 109.46722 * 60.00199 * 16 15 12 32 32 H 1.08998 * 109.46853 * 299.99458 * 17 16 15 33 33 H 1.08991 * 109.46907 * 179.97438 * 17 16 15 34 34 H 0.96699 * 113.99735 * 179.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5376 2.1529 1.2305 5 1 0.9164 1.6281 1.9412 6 6 1.8659 3.4746 1.4458 7 7 2.6220 4.1138 0.5801 8 14 1.2368 4.3573 2.9671 9 1 0.4125 3.4237 3.7758 10 1 2.3884 4.8300 3.7769 11 1 0.4090 5.5203 2.5579 12 6 2.0400 -0.7212 1.2492 13 1 1.6767 -0.2073 2.1392 14 8 3.4691 -0.7207 1.2495 15 6 1.5302 -2.1637 1.2492 16 6 2.0401 -2.8849 0.0000 17 6 1.5301 -2.1637 -1.2493 18 6 2.0401 -0.7211 -1.2493 19 1 1.6767 -0.2074 -2.1392 20 8 3.4690 -0.7206 -1.2496 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.6766 1.9564 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 2.8526 5.0437 0.7314 27 1 3.8624 -1.1627 2.0144 28 1 0.4401 -2.1637 1.2492 29 1 1.8939 -2.6777 2.1390 30 1 1.6766 -3.9125 -0.0003 31 1 3.1301 -2.8848 0.0000 32 1 0.4401 -2.1638 -1.2493 33 1 1.8938 -2.6773 -2.1392 34 1 3.8623 -1.1625 -2.0145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307197544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -117.122178 kcal Electronic energy + Delta-G solvation = -15846.832063 eV Core-core repulsion = 13358.003015 eV Total energy + Delta-G solvation = -2488.829049 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.52438 -35.49320 -33.87838 -33.33076 -31.59914 -28.75567 -26.87173 -25.32940 -23.15946 -21.92283 -20.39061 -17.68511 -16.46867 -16.25163 -15.65561 -15.24936 -14.47428 -14.17060 -13.96641 -12.83698 -12.60312 -12.35253 -12.10881 -11.69119 -11.47726 -11.26282 -11.16839 -10.90916 -10.88800 -10.82731 -10.48678 -10.06228 -9.94022 -9.52451 -9.28969 -9.05589 -8.63388 -8.51659 -8.19418 -5.85732 -3.85630 3.36545 3.43987 3.46358 4.54713 4.87439 5.02833 5.18676 5.38001 5.43316 5.49689 5.69365 5.79200 5.87565 5.91601 6.06255 6.19831 6.26035 6.28471 6.31642 6.43716 6.51164 6.64830 6.79631 6.98882 7.07240 7.29756 7.83550 8.06184 8.28895 8.43475 8.57530 8.63931 9.21269 9.75281 11.25865 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042389 B = 0.010207 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.394509 B = 2742.561637 C = 2857.910350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.039 4.039 3 C 0.041 3.959 4 C -0.506 4.506 5 H 0.054 0.946 6 C 0.056 3.944 7 N -0.894 5.894 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.286 1.286 12 C 0.129 3.871 13 H 0.057 0.943 14 O -0.528 6.528 15 C -0.158 4.158 16 C -0.105 4.105 17 C -0.154 4.154 18 C 0.117 3.883 19 H 0.041 0.959 20 O -0.528 6.528 21 H 0.051 0.949 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.007 0.993 25 H 0.038 0.962 26 H 0.257 0.743 27 H 0.349 0.651 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -12.723 -1.511 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.039 4.039 3 C 0.004 3.996 4 C -0.545 4.545 5 H 0.072 0.928 6 C -0.145 4.145 7 N -0.534 5.534 8 Si 0.713 3.287 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.213 1.213 12 C 0.069 3.931 13 H 0.075 0.925 14 O -0.329 6.329 15 C -0.196 4.196 16 C -0.143 4.143 17 C -0.191 4.191 18 C 0.058 3.942 19 H 0.059 0.941 20 O -0.329 6.329 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.026 0.974 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.192 0.808 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.472 -11.887 -1.544 12.239 hybrid contribution -0.311 -0.060 0.808 0.868 sum -2.782 -11.947 -0.735 12.289 Atomic orbital electron populations 1.21856 0.94690 0.99479 1.02926 1.20531 0.93743 0.98883 0.90778 1.19026 0.97958 0.86557 0.96086 1.21274 1.30511 0.95761 1.06945 0.92830 1.24981 0.95491 0.97763 0.96232 1.69990 1.37319 1.10472 1.35616 0.86667 0.78563 0.79796 0.83704 1.19955 1.21197 1.21254 1.21604 0.81519 0.91434 0.98506 0.92523 1.86852 1.18702 1.80454 1.46918 1.22414 1.01124 0.98547 0.97526 1.21279 1.01767 0.96908 0.94298 1.22327 1.01169 0.97861 0.97772 1.21774 0.81659 0.92744 0.98063 0.94119 1.86913 1.18526 1.80313 1.47167 0.92983 0.94172 0.91233 0.97444 0.94364 0.93342 0.80769 0.91609 0.92874 0.93598 0.90981 0.91488 0.92900 0.80625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 7.53 37.16 0.28 -2.20 16 2 C -0.04 -0.82 0.28 -154.51 -0.04 -0.86 16 3 C 0.04 1.09 3.75 -27.88 -0.10 0.99 16 4 C -0.51 -14.33 7.65 -34.44 -0.26 -14.60 16 5 H 0.05 1.46 5.68 -52.49 -0.30 1.16 16 6 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 7 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 8 Si 0.88 22.08 29.54 -169.99 -5.02 17.05 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 C 0.13 2.50 2.48 -26.74 -0.07 2.44 16 13 H 0.06 1.21 6.62 -51.93 -0.34 0.86 16 14 O -0.53 -10.73 9.98 -57.18 -0.57 -11.30 16 15 C -0.16 -2.43 5.36 -26.73 -0.14 -2.57 16 16 C -0.11 -1.50 5.63 -26.73 -0.15 -1.65 16 17 C -0.15 -2.24 5.36 -26.73 -0.14 -2.38 16 18 C 0.12 2.14 2.73 -26.73 -0.07 2.06 16 19 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 20 O -0.53 -10.10 9.98 -57.18 -0.57 -10.67 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.04 0.63 4.81 -51.93 -0.25 0.38 16 23 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.04 1.17 7.22 -51.93 -0.37 0.79 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.35 5.54 9.08 45.56 0.41 5.95 16 28 H 0.07 0.97 6.43 -51.93 -0.33 0.63 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.10 7.22 -51.93 -0.38 0.73 16 32 H 0.07 0.93 6.43 -51.93 -0.33 0.60 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.35 5.00 9.08 45.56 0.41 5.41 16 LS Contribution 256.68 15.07 3.87 3.87 Total: -1.00 -33.00 256.68 -5.86 -38.86 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.50 Total: 6.44 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.81 Total: -17.24 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.74 Total: -27.02 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -1.14 Total: -21.97 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.00 -5.86 -38.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307197544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.261 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds