Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46471 * 2 1 4 4 C 1.50701 * 109.47211 * 60.00494 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27574 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.52990 * 109.47213 * 119.99890 * 2 1 3 13 13 H 1.09005 * 109.47428 * 300.00019 * 12 2 1 14 14 O 1.42906 * 109.47339 * 180.02562 * 12 2 1 15 15 C 1.52996 * 109.47429 * 60.00403 * 12 2 1 16 16 C 1.53000 * 109.47273 * 59.99520 * 15 12 2 17 17 C 1.53004 * 109.47306 * 300.00661 * 16 15 12 18 18 C 1.52997 * 109.47190 * 240.00507 * 2 1 3 19 19 H 1.08995 * 109.47672 * 59.99235 * 18 2 1 20 20 O 1.42898 * 109.47087 * 179.97438 * 18 2 1 21 21 H 1.08995 * 109.47438 * 60.00401 * 1 2 3 22 22 H 1.09004 * 109.46658 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47069 * 299.99541 * 1 2 3 24 24 H 1.09000 * 109.47211 * 299.99520 * 3 2 1 25 25 H 1.09007 * 109.46376 * 180.02562 * 3 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.96698 * 113.99968 * 180.02562 * 14 12 2 28 28 H 1.09006 * 109.46938 * 300.00220 * 15 12 2 29 29 H 1.09000 * 109.47764 * 179.97438 * 15 12 2 30 30 H 1.08998 * 109.47692 * 180.02562 * 16 15 12 31 31 H 1.08998 * 109.46722 * 60.00199 * 16 15 12 32 32 H 1.08998 * 109.46853 * 299.99458 * 17 16 15 33 33 H 1.08991 * 109.46907 * 179.97438 * 17 16 15 34 34 H 0.96699 * 113.99735 * 179.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5376 2.1529 1.2305 5 1 0.9164 1.6281 1.9412 6 6 1.8659 3.4746 1.4458 7 7 2.6220 4.1138 0.5801 8 14 1.2368 4.3573 2.9671 9 1 0.4125 3.4237 3.7758 10 1 2.3884 4.8300 3.7769 11 1 0.4090 5.5203 2.5579 12 6 2.0400 -0.7212 1.2492 13 1 1.6767 -0.2073 2.1392 14 8 3.4691 -0.7207 1.2495 15 6 1.5302 -2.1637 1.2492 16 6 2.0401 -2.8849 0.0000 17 6 1.5301 -2.1637 -1.2493 18 6 2.0401 -0.7211 -1.2493 19 1 1.6767 -0.2074 -2.1392 20 8 3.4690 -0.7206 -1.2496 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.6766 1.9564 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 2.8526 5.0437 0.7314 27 1 3.8624 -1.1627 2.0144 28 1 0.4401 -2.1637 1.2492 29 1 1.8939 -2.6777 2.1390 30 1 1.6766 -3.9125 -0.0003 31 1 3.1301 -2.8848 0.0000 32 1 0.4401 -2.1638 -1.2493 33 1 1.8938 -2.6773 -2.1392 34 1 3.8623 -1.1625 -2.0145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307197544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -142.378198 kcal Electronic energy + Delta-G solvation = -15847.927246 eV Core-core repulsion = 13358.003015 eV Total energy + Delta-G solvation = -2489.924232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.98711 -36.98783 -35.71395 -34.87453 -33.45655 -30.08450 -28.87804 -26.88038 -25.04740 -23.33146 -21.88956 -19.23731 -18.43884 -17.72169 -17.36460 -16.80673 -16.21114 -15.69359 -15.45503 -14.31199 -14.23342 -14.08179 -13.75818 -13.24949 -13.14451 -12.83912 -12.74989 -12.71278 -12.47846 -12.29428 -12.12243 -11.85055 -11.46036 -11.29484 -10.89987 -10.71738 -10.49247 -10.27638 -10.10577 -8.11763 -6.19765 1.37955 1.38877 1.51004 2.43135 3.21151 3.52930 3.63617 3.94993 4.13518 4.17899 4.36022 4.37302 4.54284 4.56778 4.81688 4.86328 4.87394 4.94674 5.03011 5.11922 5.20727 5.31532 5.40686 5.49950 5.54262 5.62396 5.66317 5.86732 6.04194 6.34372 6.96025 7.21150 7.29518 7.46697 9.01106 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042389 B = 0.010207 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.394509 B = 2742.561637 C = 2857.910350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.045 4.045 3 C 0.053 3.947 4 C -0.513 4.513 5 H 0.064 0.936 6 C -0.008 4.008 7 N -0.939 5.939 8 Si 0.959 3.041 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.280 1.280 12 C 0.127 3.873 13 H 0.030 0.970 14 O -0.553 6.553 15 C -0.149 4.149 16 C -0.102 4.102 17 C -0.144 4.144 18 C 0.114 3.886 19 H 0.030 0.970 20 O -0.555 6.555 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.052 0.948 24 H -0.030 1.030 25 H -0.011 1.011 26 H 0.258 0.742 27 H 0.366 0.634 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 -14.990 -0.653 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.045 4.045 3 C 0.016 3.984 4 C -0.551 4.551 5 H 0.082 0.918 6 C -0.204 4.204 7 N -0.581 5.581 8 Si 0.784 3.216 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.206 1.206 12 C 0.068 3.932 13 H 0.048 0.952 14 O -0.357 6.357 15 C -0.186 4.186 16 C -0.139 4.139 17 C -0.181 4.181 18 C 0.055 3.945 19 H 0.048 0.952 20 O -0.359 6.359 21 H 0.066 0.934 22 H 0.098 0.902 23 H 0.072 0.928 24 H -0.012 1.012 25 H 0.007 0.993 26 H 0.067 0.933 27 H 0.212 0.788 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.883 -14.184 -0.684 14.722 hybrid contribution 0.206 0.663 0.498 0.854 sum -3.677 -13.521 -0.186 14.014 Atomic orbital electron populations 1.21794 0.92921 1.01733 1.01910 1.20509 0.95265 0.95266 0.93481 1.18776 0.94697 0.90799 0.94093 1.21658 1.29982 0.96066 1.07362 0.91808 1.25978 0.95766 0.98949 0.99747 1.70157 1.39031 1.10878 1.38027 0.85493 0.78071 0.78592 0.79464 1.18163 1.20999 1.20607 1.21546 0.81158 0.94165 0.96289 0.95167 1.86815 1.19526 1.81199 1.48161 1.22312 1.01751 0.95279 0.99291 1.21284 1.01129 0.98306 0.93207 1.22248 1.01844 0.94745 0.99303 1.21747 0.81414 0.95313 0.96042 0.95207 1.86864 1.19290 1.81121 1.48618 0.93441 0.90166 0.92848 1.01188 0.99304 0.93310 0.78835 0.90306 0.90823 0.90366 0.92155 0.90120 0.90364 0.78389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.53 71.98 0.54 -4.04 16 2 C -0.05 -1.88 0.28 -52.18 -0.01 -1.90 16 3 C 0.05 3.01 3.75 29.85 0.11 3.12 16 4 C -0.51 -29.82 7.65 25.60 0.20 -29.62 16 5 H 0.06 3.51 5.68 -2.91 -0.02 3.49 16 6 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 7 N -0.94 -60.59 13.29 21.45 0.28 -60.31 16 8 Si 0.96 45.96 29.54 68.60 2.03 47.98 16 9 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 C 0.13 4.86 2.48 30.59 0.08 4.94 16 13 H 0.03 1.29 6.62 -2.38 -0.02 1.27 16 14 O -0.55 -22.57 9.98 -127.99 -1.28 -23.85 16 15 C -0.15 -4.04 5.36 30.59 0.16 -3.88 16 16 C -0.10 -2.49 5.63 30.60 0.17 -2.32 16 17 C -0.14 -3.67 5.36 30.60 0.16 -3.50 16 18 C 0.11 4.09 2.73 30.59 0.08 4.17 16 19 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 20 O -0.55 -21.33 9.98 -127.99 -1.28 -22.61 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.08 2.24 4.81 -2.38 -0.01 2.23 16 23 H 0.05 2.08 6.62 -2.39 -0.02 2.06 16 24 H -0.03 -1.88 8.14 -2.39 -0.02 -1.90 16 25 H -0.01 -0.75 7.22 -2.38 -0.02 -0.77 16 26 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.37 11.48 9.08 -74.06 -0.67 10.81 16 28 H 0.08 1.95 6.43 -2.38 -0.02 1.94 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.65 7.22 -2.39 -0.02 1.63 16 32 H 0.08 1.86 6.43 -2.39 -0.02 1.85 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.37 10.38 9.08 -74.06 -0.67 9.71 16 Total: -1.00 -74.51 256.68 1.48 -73.04 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.24 Total: 18.81 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 1.96 Total: -33.06 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.28 Total: -60.31 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -2.55 Total: -46.46 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -74.51 1.48 -73.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307197544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.342 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds