Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46593 * 2 1 4 4 C 1.50695 * 109.47024 * 119.99697 * 2 1 3 5 5 N 1.34771 * 120.00351 * 300.00276 * 4 2 1 6 6 O 1.21285 * 119.99765 * 120.00173 * 4 2 1 7 7 N 1.46901 * 109.47048 * 240.00223 * 2 1 3 8 8 C 1.47962 * 110.99645 * 179.97438 * 7 2 1 9 9 C 1.53939 * 86.17954 * 222.41370 * 8 7 2 10 10 O 1.42901 * 113.73443 * 269.25769 * 9 8 7 11 11 C 1.50699 * 113.73181 * 138.07765 * 9 8 7 12 12 H 1.07999 * 120.00015 * 4.91121 * 11 9 8 13 13 C 1.37879 * 119.99686 * 184.90847 * 11 9 8 14 14 N 1.31521 * 119.99972 * 13.82310 * 13 11 9 15 15 Si 1.86792 * 119.99875 * 193.81760 * 13 11 9 16 16 H 1.48504 * 109.47216 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47601 * 300.00327 * 15 13 11 18 18 H 1.48506 * 109.47155 * 60.00602 * 15 13 11 19 19 C 1.47957 * 111.00157 * 80.63986 * 7 2 1 20 20 H 1.08997 * 109.47008 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47484 * 300.00121 * 1 2 3 22 22 H 1.08996 * 109.47301 * 60.00214 * 1 2 3 23 23 H 0.97001 * 120.00307 * 359.97438 * 5 4 2 24 24 H 0.96997 * 120.00306 * 180.02562 * 5 4 2 25 25 H 1.08999 * 113.76019 * 108.09949 * 8 7 2 26 26 H 1.09000 * 113.75802 * 336.73263 * 8 7 2 27 27 H 0.96693 * 113.99776 * 171.47023 * 10 9 8 28 28 H 0.97001 * 119.99982 * 5.87544 * 14 13 11 29 29 H 1.08994 * 113.76072 * 23.25977 * 19 7 2 30 30 H 1.09001 * 113.75391 * 251.89917 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7067 -0.2499 2.4545 6 8 2.7296 -1.6964 1.1192 7 7 2.0197 -0.6925 -1.1995 8 6 3.4988 -0.7116 -1.2339 9 6 3.3656 -0.3801 -2.7313 10 8 3.3097 -1.5335 -3.5730 11 6 4.3519 0.6521 -3.2140 12 1 5.1137 1.0252 -2.5455 13 6 4.2816 1.1200 -4.5090 14 7 3.2118 0.8835 -5.2366 15 14 5.7058 2.0900 -5.2301 16 1 5.3843 2.4765 -6.6275 17 1 5.9332 3.3128 -4.4187 18 1 6.9320 1.2523 -5.2174 19 6 1.9846 0.2005 -2.3787 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.1493 0.5390 2.5436 24 1 2.0303 -0.7069 3.2465 25 1 3.9299 -1.6934 -1.0382 26 1 3.9620 0.0821 -0.6478 27 1 3.0962 -1.3372 -4.4954 28 1 2.4386 0.4551 -4.8371 29 1 2.0051 1.2609 -2.1274 30 1 1.2056 -0.0524 -3.0979 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307561294.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = -53.584371 kcal Electronic energy + Delta-G solvation = -14971.838092 eV Core-core repulsion = 12382.223906 eV Total energy + Delta-G solvation = -2589.614186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07625 -38.27560 -34.79077 -33.70448 -32.18856 -31.40789 -26.64079 -25.56785 -24.16472 -22.80703 -19.85237 -18.88868 -17.91127 -17.17040 -16.58369 -15.32556 -14.82327 -14.58312 -14.21446 -13.78399 -13.41311 -13.21252 -12.53300 -12.21904 -11.96262 -11.64255 -11.36778 -10.91453 -10.85036 -10.66093 -10.36206 -10.13539 -9.59352 -9.49673 -9.05643 -8.66596 -8.36245 -7.76269 -6.53917 -4.31561 2.84619 3.35734 3.40615 3.58092 3.58395 4.39408 4.62214 4.94890 5.01943 5.23257 5.36510 5.51595 5.78138 5.87570 5.95388 6.08671 6.23725 6.30301 6.62348 6.78598 6.89590 7.04138 7.12879 7.37274 7.80683 7.89388 8.22970 8.44257 8.60889 9.11585 9.38955 10.77500 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.048086 B = 0.008458 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.153215 B = 3309.570139 C = 3381.174251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.023 3.977 3 H 0.069 0.931 4 C 0.520 3.480 5 N -0.861 5.861 6 O -0.522 6.522 7 N -0.457 5.457 8 C 0.038 3.962 9 C 0.219 3.781 10 O -0.563 6.563 11 C -0.618 4.618 12 H 0.058 0.942 13 C 0.035 3.965 14 N -0.901 5.901 15 Si 1.064 2.936 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.285 1.285 19 C -0.022 4.022 20 H 0.065 0.935 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.398 0.602 24 H 0.397 0.603 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.369 0.631 28 H 0.270 0.730 29 H 0.065 0.935 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 2.698 10.624 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 H 0.087 0.913 4 C 0.305 3.695 5 N -0.427 5.427 6 O -0.395 6.395 7 N -0.181 5.181 8 C -0.090 4.090 9 C 0.178 3.822 10 O -0.369 6.369 11 C -0.656 4.656 12 H 0.076 0.924 13 C -0.171 4.171 14 N -0.538 5.538 15 Si 0.891 3.109 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.211 1.211 19 C -0.151 4.151 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.226 0.774 24 H 0.228 0.772 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.218 0.782 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.384 1.847 9.535 10.656 hybrid contribution -0.534 0.743 1.585 1.830 sum -4.918 2.590 11.120 12.431 Atomic orbital electron populations 1.21650 0.92497 1.02961 1.01912 1.22283 0.97627 0.97116 0.91926 0.91333 1.20688 0.79503 0.84443 0.84910 1.43893 1.56753 1.34000 1.08014 1.90752 1.36636 1.25631 1.86525 1.68650 1.12287 1.37228 0.99963 1.23823 0.87708 1.01151 0.96352 1.20098 0.90382 0.84080 0.87670 1.86268 1.93633 1.33857 1.23121 1.22356 1.17500 1.24877 1.00891 0.92366 1.25920 1.01125 0.96193 0.93826 1.70893 1.03546 1.39946 1.39424 0.83633 0.75007 0.75879 0.76342 1.20579 1.21361 1.21092 1.24935 1.02290 0.95276 0.92607 0.91554 0.92541 0.91390 0.77412 0.77226 0.89875 0.92144 0.78235 0.91805 0.91668 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.27 37.16 0.34 -1.43 16 2 C 0.02 0.39 2.13 -68.86 -0.15 0.24 16 3 H 0.07 1.11 7.62 -51.93 -0.40 0.71 16 4 C 0.52 8.58 7.15 -10.99 -0.08 8.50 16 5 N -0.86 -9.22 8.77 31.22 0.27 -8.95 16 6 O -0.52 -11.03 15.59 5.55 0.09 -10.94 16 7 N -0.46 -9.89 5.78 -231.66 -1.34 -11.23 16 8 C 0.04 0.91 5.54 -2.76 -0.02 0.89 16 9 C 0.22 5.68 1.08 -90.86 -0.10 5.58 16 10 O -0.56 -15.29 13.45 -35.23 -0.47 -15.77 16 11 C -0.62 -17.07 8.56 -34.44 -0.29 -17.37 16 12 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 13 C 0.03 0.95 5.26 -17.82 -0.09 0.85 16 14 N -0.90 -25.26 12.80 55.43 0.71 -24.55 16 15 Si 1.06 24.16 29.93 -169.99 -5.09 19.07 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.02 -0.50 6.03 -2.79 -0.02 -0.52 16 20 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 21 H 0.06 0.55 7.56 -51.93 -0.39 0.15 16 22 H 0.07 0.92 7.91 -51.93 -0.41 0.51 16 23 H 0.40 2.96 8.25 -40.82 -0.34 2.62 16 24 H 0.40 3.69 8.93 -40.82 -0.36 3.32 16 25 H 0.08 2.12 7.79 -51.93 -0.40 1.72 16 26 H 0.06 1.39 7.85 -51.93 -0.41 0.98 16 27 H 0.37 9.76 6.95 45.56 0.32 10.08 16 28 H 0.27 7.43 5.52 -40.82 -0.23 7.21 16 29 H 0.07 1.46 7.57 -51.93 -0.39 1.07 16 30 H 0.07 1.65 7.79 -51.93 -0.40 1.24 16 LS Contribution 252.41 15.07 3.80 3.80 Total: -1.00 -32.69 252.41 -5.48 -38.17 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -3.05 Total: 13.64 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.40 Total: -3.24 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.36 Total: -44.73 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.39 Total: -26.71 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.09 Total: 19.07 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.69 -5.48 -38.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307561294.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.415 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds