Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46593 * 2 1 4 4 C 1.50695 * 109.47024 * 119.99697 * 2 1 3 5 5 N 1.34771 * 120.00351 * 300.00276 * 4 2 1 6 6 O 1.21285 * 119.99765 * 120.00173 * 4 2 1 7 7 N 1.46901 * 109.47048 * 240.00223 * 2 1 3 8 8 C 1.47962 * 110.99645 * 179.97438 * 7 2 1 9 9 C 1.53939 * 86.17954 * 222.41370 * 8 7 2 10 10 O 1.42901 * 113.73443 * 269.25769 * 9 8 7 11 11 C 1.50699 * 113.73181 * 138.07765 * 9 8 7 12 12 H 1.07999 * 120.00015 * 4.91121 * 11 9 8 13 13 C 1.37879 * 119.99686 * 184.90847 * 11 9 8 14 14 N 1.31521 * 119.99972 * 13.82310 * 13 11 9 15 15 Si 1.86792 * 119.99875 * 193.81760 * 13 11 9 16 16 H 1.48504 * 109.47216 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47601 * 300.00327 * 15 13 11 18 18 H 1.48506 * 109.47155 * 60.00602 * 15 13 11 19 19 C 1.47957 * 111.00157 * 80.63986 * 7 2 1 20 20 H 1.08997 * 109.47008 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47484 * 300.00121 * 1 2 3 22 22 H 1.08996 * 109.47301 * 60.00214 * 1 2 3 23 23 H 0.97001 * 120.00307 * 359.97438 * 5 4 2 24 24 H 0.96997 * 120.00306 * 180.02562 * 5 4 2 25 25 H 1.08999 * 113.76019 * 108.09949 * 8 7 2 26 26 H 1.09000 * 113.75802 * 336.73263 * 8 7 2 27 27 H 0.96693 * 113.99776 * 171.47023 * 10 9 8 28 28 H 0.97001 * 119.99982 * 5.87544 * 14 13 11 29 29 H 1.08994 * 113.76072 * 23.25977 * 19 7 2 30 30 H 1.09001 * 113.75391 * 251.89917 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7067 -0.2499 2.4545 6 8 2.7296 -1.6964 1.1192 7 7 2.0197 -0.6925 -1.1995 8 6 3.4988 -0.7116 -1.2339 9 6 3.3656 -0.3801 -2.7313 10 8 3.3097 -1.5335 -3.5730 11 6 4.3519 0.6521 -3.2140 12 1 5.1137 1.0252 -2.5455 13 6 4.2816 1.1200 -4.5090 14 7 3.2118 0.8835 -5.2366 15 14 5.7058 2.0900 -5.2301 16 1 5.3843 2.4765 -6.6275 17 1 5.9332 3.3128 -4.4187 18 1 6.9320 1.2523 -5.2174 19 6 1.9846 0.2005 -2.3787 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.1493 0.5390 2.5436 24 1 2.0303 -0.7069 3.2465 25 1 3.9299 -1.6934 -1.0382 26 1 3.9620 0.0821 -0.6478 27 1 3.0962 -1.3372 -4.4954 28 1 2.4386 0.4551 -4.8371 29 1 2.0051 1.2609 -2.1274 30 1 1.2056 -0.0524 -3.0979 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307561294.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = -84.018475 kcal Electronic energy + Delta-G solvation = -14973.157813 eV Core-core repulsion = 12382.223906 eV Total energy + Delta-G solvation = -2590.933908 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65590 -39.86639 -36.66319 -34.96225 -34.29855 -32.79733 -28.46737 -27.32627 -25.89567 -24.37653 -21.25517 -20.78544 -19.80667 -18.46782 -17.90015 -17.14480 -16.35489 -16.18791 -16.06087 -15.56540 -14.98745 -14.81674 -14.14394 -13.77408 -13.57838 -13.28961 -13.02145 -12.67022 -12.57555 -12.38312 -12.21728 -11.92837 -11.11891 -10.84123 -10.70972 -10.67053 -10.23206 -9.63745 -8.68049 -6.47852 1.55080 1.57048 1.60710 1.82482 2.40531 2.53012 2.92474 2.99639 3.65341 3.82137 3.93243 4.10952 4.13436 4.16894 4.40655 4.68137 4.77410 4.79320 4.89916 5.12484 5.18078 5.32542 5.80055 5.86643 6.05411 6.07132 6.43820 6.47211 7.02401 7.29188 7.32819 8.63756 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.048086 B = 0.008458 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.153215 B = 3309.570139 C = 3381.174251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.016 3.984 3 H 0.082 0.918 4 C 0.519 3.481 5 N -0.829 5.829 6 O -0.577 6.577 7 N -0.465 5.465 8 C 0.048 3.952 9 C 0.192 3.808 10 O -0.576 6.576 11 C -0.639 4.639 12 H 0.050 0.950 13 C -0.005 4.005 14 N -0.916 5.916 15 Si 1.110 2.890 16 H -0.279 1.279 17 H -0.269 1.269 18 H -0.279 1.279 19 C -0.002 4.002 20 H 0.055 0.945 21 H 0.102 0.898 22 H 0.065 0.935 23 H 0.418 0.582 24 H 0.410 0.590 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.368 0.632 28 H 0.264 0.736 29 H 0.069 0.931 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 4.170 11.851 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 H 0.100 0.900 4 C 0.303 3.697 5 N -0.395 5.395 6 O -0.456 6.456 7 N -0.189 5.189 8 C -0.081 4.081 9 C 0.152 3.848 10 O -0.382 6.382 11 C -0.677 4.677 12 H 0.069 0.931 13 C -0.206 4.206 14 N -0.553 5.553 15 Si 0.932 3.068 16 H -0.204 1.204 17 H -0.194 1.194 18 H -0.205 1.205 19 C -0.132 4.132 20 H 0.074 0.926 21 H 0.120 0.880 22 H 0.084 0.916 23 H 0.250 0.750 24 H 0.242 0.758 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.216 0.784 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.104 3.354 10.828 12.431 hybrid contribution -0.372 0.279 1.292 1.373 sum -5.476 3.632 12.120 13.787 Atomic orbital electron populations 1.21673 0.89542 1.03008 1.04146 1.22459 0.99908 0.97119 0.90187 0.90019 1.20642 0.79001 0.83767 0.86244 1.43549 1.55410 1.33995 1.06505 1.90744 1.39350 1.28124 1.87378 1.68512 1.10537 1.38033 1.01832 1.23608 0.89573 0.99806 0.95071 1.20446 0.92216 0.83809 0.88331 1.86251 1.93831 1.34885 1.23257 1.22585 1.18030 1.25579 1.01498 0.93127 1.27177 1.02594 0.96588 0.94225 1.70975 1.03933 1.40721 1.39631 0.83024 0.72385 0.75466 0.75923 1.20432 1.19360 1.20501 1.24613 1.00029 0.95409 0.93114 0.92582 0.87961 0.91564 0.74975 0.75836 0.92321 0.91682 0.78394 0.92426 0.91247 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.27 71.98 0.67 -2.33 16 2 C 0.02 0.50 2.13 44.17 0.09 0.59 16 3 H 0.08 2.41 7.62 -2.39 -0.02 2.40 16 4 C 0.52 16.18 7.15 87.66 0.63 16.80 16 5 N -0.83 -15.01 8.77 -173.54 -1.52 -16.53 16 6 O -0.58 -24.30 15.59 -3.05 -0.05 -24.35 16 7 N -0.47 -19.98 5.78 -890.05 -5.15 -25.13 16 8 C 0.05 2.34 5.54 86.41 0.48 2.82 16 9 C 0.19 10.13 1.08 -10.91 -0.01 10.11 16 10 O -0.58 -32.09 13.45 -148.98 -2.00 -34.09 16 11 C -0.64 -35.50 8.56 25.60 0.22 -35.28 16 12 H 0.05 2.81 7.85 -2.91 -0.02 2.79 16 13 C 0.00 -0.25 5.26 84.65 0.45 0.20 16 14 N -0.92 -51.33 12.80 21.45 0.27 -51.06 16 15 Si 1.11 48.03 29.93 68.60 2.05 50.08 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 19 C 0.00 -0.11 6.03 86.39 0.52 0.41 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.10 1.48 7.56 -2.39 -0.02 1.46 16 22 H 0.07 1.62 7.91 -2.39 -0.02 1.60 16 23 H 0.42 4.34 8.25 -92.71 -0.76 3.57 16 24 H 0.41 6.31 8.93 -92.71 -0.83 5.48 16 25 H 0.06 3.10 7.79 -2.39 -0.02 3.08 16 26 H 0.07 3.02 7.85 -2.39 -0.02 3.00 16 27 H 0.37 20.01 6.95 -74.06 -0.52 19.50 16 28 H 0.26 14.71 5.52 -92.71 -0.51 14.19 16 29 H 0.07 3.05 7.57 -2.39 -0.02 3.03 16 30 H 0.07 3.14 7.79 -2.39 -0.02 3.12 16 Total: -1.00 -71.35 252.41 -4.02 -75.38 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.67 Total: 32.37 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 3.04 Total: -6.67 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -6.39 Total: -92.71 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -2.05 Total: -58.44 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.05 Total: 50.08 kcal Total: -71.35 -4.02 -75.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307561294.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.643 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds