Wall clock time and date at job start Mon Mar 30 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 109.46790 * 2 1 4 4 C 1.50700 * 109.47426 * 240.00220 * 2 1 3 5 5 N 1.34778 * 120.00348 * 86.54631 * 4 2 1 6 6 O 1.21284 * 119.99599 * 266.55057 * 4 2 1 7 7 N 1.46903 * 109.47585 * 119.99670 * 2 1 3 8 8 C 1.47963 * 110.99845 * 292.00679 * 7 2 1 9 9 C 1.53936 * 86.17718 * 222.41614 * 8 7 2 10 10 O 1.42899 * 113.73106 * 269.25635 * 9 8 7 11 11 C 1.50701 * 113.73266 * 138.08597 * 9 8 7 12 12 H 1.08003 * 119.99652 * 359.97438 * 11 9 8 13 13 C 1.37869 * 120.00051 * 179.72568 * 11 9 8 14 14 N 1.31509 * 120.00107 * 0.26793 * 13 11 9 15 15 Si 1.86800 * 120.00078 * 180.27182 * 13 11 9 16 16 H 1.48502 * 109.46972 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47288 * 119.99622 * 15 13 11 18 18 H 1.48504 * 109.47430 * 239.99705 * 15 13 11 19 19 C 1.47962 * 110.99975 * 192.65034 * 7 2 1 20 20 H 1.08999 * 109.46712 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47033 * 299.99582 * 1 2 3 22 22 H 1.08997 * 109.47463 * 60.00427 * 1 2 3 23 23 H 0.97001 * 119.99573 * 0.02562 * 5 4 2 24 24 H 0.96989 * 120.00153 * 180.02562 * 5 4 2 25 25 H 1.09001 * 113.75637 * 108.09935 * 8 7 2 26 26 H 1.09000 * 113.76091 * 336.73319 * 8 7 2 27 27 H 0.96701 * 113.99945 * 178.10359 * 10 9 8 28 28 H 0.97007 * 120.00333 * 180.02562 * 14 13 11 29 29 H 1.08993 * 113.75969 * 23.26260 * 19 7 2 30 30 H 1.09004 * 113.75373 * 251.90274 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.1908 -0.0308 -2.3835 6 8 2.2941 -1.8937 -1.1831 7 7 2.0198 -0.6924 1.1995 8 6 1.7085 0.0806 2.4221 9 6 3.1322 -0.2766 2.8861 10 8 3.2037 -1.4864 3.6433 11 6 3.8627 0.8687 3.5387 12 1 3.3789 1.8287 3.6422 13 6 5.1465 0.6894 4.0081 14 7 5.7357 -0.4795 3.8817 15 14 6.0492 2.1069 4.8237 16 1 5.1737 3.3063 4.8418 17 1 6.4046 1.7319 6.2160 18 1 7.2871 2.4097 4.0614 19 6 3.4672 -0.4557 1.3945 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.9817 0.9157 -2.4213 24 1 2.5138 -0.4880 -3.1755 25 1 0.9230 -0.3630 3.0340 26 1 1.5593 1.1453 2.2425 27 1 4.1002 -1.7297 3.9121 28 1 6.6389 -0.6057 4.2123 29 1 3.8323 0.4521 0.9143 30 1 4.0869 -1.3277 1.1851 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307561300.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:38 Heat of formation + Delta-G solvation = -52.691178 kcal Electronic energy + Delta-G solvation = -14897.348033 eV Core-core repulsion = 12307.772579 eV Total energy + Delta-G solvation = -2589.575454 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.83826 -38.14633 -34.47943 -33.42329 -32.06509 -31.33273 -27.02816 -25.45552 -24.22020 -22.71241 -19.73380 -18.64634 -17.53295 -16.73017 -16.55490 -15.11772 -14.99579 -14.62076 -14.12444 -13.74581 -13.52498 -12.87826 -12.21138 -11.98453 -11.87029 -11.56549 -11.44682 -11.12936 -10.74350 -10.72024 -10.38867 -10.01190 -9.47890 -9.42670 -9.28057 -8.63508 -8.18483 -7.78131 -6.25046 -4.35729 2.97161 3.18222 3.27065 3.30281 3.68899 4.25304 4.71381 4.99224 5.09240 5.35347 5.43417 5.66153 5.88155 5.99607 6.08696 6.27374 6.32310 6.41985 6.69788 6.94733 7.08481 7.17892 7.34819 7.49792 7.77159 7.95751 8.01463 8.57680 8.66302 9.34504 9.69689 10.80689 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042193 B = 0.008648 C = 0.008474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.450528 B = 3237.144449 C = 3303.523648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.027 3.973 3 H 0.060 0.940 4 C 0.523 3.477 5 N -0.864 5.864 6 O -0.520 6.520 7 N -0.454 5.454 8 C 0.010 3.990 9 C 0.246 3.754 10 O -0.570 6.570 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.070 3.930 14 N -0.895 5.895 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.013 4.013 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.397 0.603 24 H 0.396 0.604 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.389 0.611 28 H 0.271 0.729 29 H 0.056 0.944 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 5.122 -8.410 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 H 0.078 0.922 4 C 0.307 3.693 5 N -0.429 5.429 6 O -0.393 6.393 7 N -0.178 5.178 8 C -0.118 4.118 9 C 0.204 3.796 10 O -0.382 6.382 11 C -0.576 4.576 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.536 5.536 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.208 1.208 19 C -0.142 4.142 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.225 0.775 24 H 0.227 0.773 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.244 0.756 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.566 3.568 -8.315 11.180 hybrid contribution 1.530 1.970 -0.073 2.496 sum -5.036 5.538 -8.388 11.242 Atomic orbital electron populations 1.21676 0.92503 1.03195 1.01888 1.22229 0.97353 0.96559 0.92463 0.92216 1.20644 0.76654 0.87513 0.84511 1.43939 1.71742 1.14119 1.13065 1.90730 1.48481 1.15638 1.84456 1.68669 1.08306 1.42315 0.98468 1.24181 1.00609 0.95722 0.91329 1.19712 0.89131 0.84304 0.86443 1.86045 1.36245 1.42103 1.73808 1.21682 0.99158 0.97277 1.39515 0.91574 1.25071 0.97123 0.96255 0.94725 1.69364 1.14815 1.22862 1.46562 0.86365 0.79402 0.81984 0.79200 1.19609 1.20633 1.20819 1.24737 0.88144 0.99398 1.01896 0.91356 0.91333 0.92558 0.77492 0.77330 0.90371 0.91669 0.75588 0.91897 0.92589 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.20 37.16 0.34 -1.54 16 2 C 0.03 0.46 2.05 -68.86 -0.14 0.31 16 3 H 0.06 0.94 7.69 -51.92 -0.40 0.54 16 4 C 0.52 9.04 6.83 -10.98 -0.07 8.96 16 5 N -0.86 -10.05 8.87 31.22 0.28 -9.77 16 6 O -0.52 -11.52 17.45 5.55 0.10 -11.42 16 7 N -0.45 -9.93 5.62 -231.65 -1.30 -11.23 16 8 C 0.01 0.22 6.36 -2.76 -0.02 0.20 16 9 C 0.25 6.35 1.44 -90.84 -0.13 6.22 16 10 O -0.57 -15.95 13.48 -35.23 -0.47 -16.42 16 11 C -0.54 -14.36 8.62 -34.44 -0.30 -14.66 16 12 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 13 C 0.07 1.87 5.40 -17.82 -0.10 1.77 16 14 N -0.90 -24.40 11.08 55.43 0.61 -23.79 16 15 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.01 -0.31 6.90 -2.77 -0.02 -0.33 16 20 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.07 0.91 7.45 -51.93 -0.39 0.53 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.40 3.31 8.83 -40.82 -0.36 2.95 16 24 H 0.40 4.04 8.93 -40.82 -0.36 3.68 16 25 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 26 H 0.07 1.28 7.78 -51.93 -0.40 0.88 16 27 H 0.39 11.04 6.45 45.56 0.29 11.33 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.06 1.31 7.70 -51.93 -0.40 0.91 16 30 H 0.07 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 257.67 15.07 3.88 3.88 Total: -1.00 -31.94 257.67 -5.62 -37.56 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -3.26 Total: 14.92 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.43 Total: 0.94 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.41 Total: -44.79 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.38 Total: -27.85 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.94 -5.62 -37.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307561300.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.133 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds