Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 109.46790 * 2 1 4 4 C 1.50700 * 109.47426 * 240.00220 * 2 1 3 5 5 N 1.34778 * 120.00348 * 86.54631 * 4 2 1 6 6 O 1.21284 * 119.99599 * 266.55057 * 4 2 1 7 7 N 1.46903 * 109.47585 * 119.99670 * 2 1 3 8 8 C 1.47963 * 110.99845 * 292.00679 * 7 2 1 9 9 C 1.53936 * 86.17718 * 222.41614 * 8 7 2 10 10 O 1.42899 * 113.73106 * 269.25635 * 9 8 7 11 11 C 1.50701 * 113.73266 * 138.08597 * 9 8 7 12 12 H 1.08003 * 119.99652 * 359.97438 * 11 9 8 13 13 C 1.37869 * 120.00051 * 179.72568 * 11 9 8 14 14 N 1.31509 * 120.00107 * 0.26793 * 13 11 9 15 15 Si 1.86800 * 120.00078 * 180.27182 * 13 11 9 16 16 H 1.48502 * 109.46972 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47288 * 119.99622 * 15 13 11 18 18 H 1.48504 * 109.47430 * 239.99705 * 15 13 11 19 19 C 1.47962 * 110.99975 * 192.65034 * 7 2 1 20 20 H 1.08999 * 109.46712 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47033 * 299.99582 * 1 2 3 22 22 H 1.08997 * 109.47463 * 60.00427 * 1 2 3 23 23 H 0.97001 * 119.99573 * 0.02562 * 5 4 2 24 24 H 0.96989 * 120.00153 * 180.02562 * 5 4 2 25 25 H 1.09001 * 113.75637 * 108.09935 * 8 7 2 26 26 H 1.09000 * 113.76091 * 336.73319 * 8 7 2 27 27 H 0.96701 * 113.99945 * 178.10359 * 10 9 8 28 28 H 0.97007 * 120.00333 * 180.02562 * 14 13 11 29 29 H 1.08993 * 113.75969 * 23.26260 * 19 7 2 30 30 H 1.09004 * 113.75373 * 251.90274 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.1908 -0.0308 -2.3835 6 8 2.2941 -1.8937 -1.1831 7 7 2.0198 -0.6924 1.1995 8 6 1.7085 0.0806 2.4221 9 6 3.1322 -0.2766 2.8861 10 8 3.2037 -1.4864 3.6433 11 6 3.8627 0.8687 3.5387 12 1 3.3789 1.8287 3.6422 13 6 5.1465 0.6894 4.0081 14 7 5.7357 -0.4795 3.8817 15 14 6.0492 2.1069 4.8237 16 1 5.1737 3.3063 4.8418 17 1 6.4046 1.7319 6.2160 18 1 7.2871 2.4097 4.0614 19 6 3.4672 -0.4557 1.3945 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.9817 0.9157 -2.4213 24 1 2.5138 -0.4880 -3.1755 25 1 0.9230 -0.3630 3.0340 26 1 1.5593 1.1453 2.2425 27 1 4.1002 -1.7297 3.9121 28 1 6.6389 -0.6057 4.2123 29 1 3.8323 0.4521 0.9143 30 1 4.0869 -1.3277 1.1851 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307561300.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = -82.503088 kcal Electronic energy + Delta-G solvation = -14898.640775 eV Core-core repulsion = 12307.772579 eV Total energy + Delta-G solvation = -2590.868196 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.40588 -39.74832 -36.35654 -34.72042 -34.10687 -32.79070 -28.84525 -27.18951 -25.90086 -24.26150 -21.13853 -20.50272 -19.29852 -18.14820 -17.92275 -17.10315 -16.69577 -16.09957 -15.80158 -15.28384 -15.23620 -14.45101 -13.90193 -13.69491 -13.37877 -13.15984 -12.97813 -12.86602 -12.50498 -12.41756 -12.22994 -11.95084 -11.17978 -10.83027 -10.65561 -10.63187 -10.11928 -9.54232 -8.23546 -6.42726 1.41918 1.44859 1.56338 1.63573 2.37138 2.49853 2.96313 3.15226 3.88688 3.98007 4.05636 4.20485 4.27510 4.42525 4.54357 4.78278 4.85733 4.92195 5.12475 5.20217 5.38406 5.46402 5.75169 5.90643 5.97950 6.21178 6.54162 6.64367 7.30923 7.39381 7.52982 8.81639 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042193 B = 0.008648 C = 0.008474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.450528 B = 3237.144449 C = 3303.523648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.020 3.980 3 H 0.084 0.916 4 C 0.519 3.481 5 N -0.833 5.833 6 O -0.580 6.580 7 N -0.471 5.471 8 C 0.026 3.974 9 C 0.215 3.785 10 O -0.587 6.587 11 C -0.556 4.556 12 H 0.073 0.927 13 C 0.022 3.978 14 N -0.923 5.923 15 Si 0.971 3.029 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.279 1.279 19 C -0.001 4.001 20 H 0.049 0.951 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.418 0.582 24 H 0.407 0.593 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.381 0.619 28 H 0.273 0.727 29 H 0.063 0.937 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 7.504 -9.236 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 H 0.102 0.898 4 C 0.304 3.696 5 N -0.399 5.399 6 O -0.458 6.458 7 N -0.195 5.195 8 C -0.102 4.102 9 C 0.174 3.826 10 O -0.398 6.398 11 C -0.594 4.594 12 H 0.091 0.909 13 C -0.178 4.178 14 N -0.564 5.564 15 Si 0.796 3.204 16 H -0.185 1.185 17 H -0.207 1.207 18 H -0.205 1.205 19 C -0.131 4.131 20 H 0.068 0.932 21 H 0.096 0.904 22 H 0.114 0.886 23 H 0.250 0.750 24 H 0.239 0.761 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.235 0.765 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.426 6.009 -9.189 13.255 hybrid contribution 1.758 1.238 0.110 2.153 sum -5.668 7.247 -9.078 12.925 Atomic orbital electron populations 1.21689 0.89846 1.02788 1.04316 1.22407 0.99463 0.96973 0.90358 0.89796 1.20768 0.76195 0.86859 0.85820 1.43628 1.69526 1.15002 1.11740 1.90714 1.51452 1.18146 1.85502 1.68516 1.06443 1.43958 1.00622 1.24090 0.98021 0.97157 0.90939 1.20182 0.92132 0.83460 0.86790 1.86028 1.35762 1.43543 1.74448 1.21970 0.99693 0.97739 1.39989 0.90900 1.25905 0.97944 0.98678 0.95228 1.69464 1.15122 1.24639 1.47181 0.85307 0.78125 0.79087 0.77866 1.18528 1.20652 1.20494 1.24437 0.89524 0.97844 1.01246 0.93190 0.90437 0.88610 0.75046 0.76080 0.90341 0.89025 0.76476 0.91755 0.91920 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.20 71.98 0.66 -2.53 16 2 C 0.02 0.65 2.05 44.17 0.09 0.74 16 3 H 0.08 2.30 7.69 -2.38 -0.02 2.28 16 4 C 0.52 17.15 6.83 87.66 0.60 17.75 16 5 N -0.83 -16.98 8.87 -173.53 -1.54 -18.52 16 6 O -0.58 -25.87 17.45 -3.04 -0.05 -25.92 16 7 N -0.47 -20.37 5.62 -890.02 -5.00 -25.37 16 8 C 0.03 1.11 6.36 86.41 0.55 1.66 16 9 C 0.22 11.18 1.44 -10.90 -0.02 11.17 16 10 O -0.59 -33.77 13.48 -148.98 -2.01 -35.78 16 11 C -0.56 -29.40 8.62 25.60 0.22 -29.18 16 12 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 13 C 0.02 1.15 5.40 84.65 0.46 1.61 16 14 N -0.92 -51.08 11.08 21.44 0.24 -50.85 16 15 Si 0.97 41.27 29.54 68.60 2.03 43.29 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 C 0.00 -0.05 6.90 86.40 0.60 0.55 16 20 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.08 1.79 7.45 -2.39 -0.02 1.77 16 22 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.42 5.24 8.83 -92.71 -0.82 4.42 16 24 H 0.41 7.25 8.93 -92.72 -0.83 6.42 16 25 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 26 H 0.09 3.33 7.78 -2.39 -0.02 3.31 16 27 H 0.38 22.55 6.45 -74.06 -0.48 22.08 16 28 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.06 2.91 7.70 -2.39 -0.02 2.89 16 30 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -70.63 257.67 -4.12 -74.76 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.95 Total: 36.62 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 3.16 Total: 1.76 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -6.30 Total: -94.74 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -2.06 Total: -61.70 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -70.63 -4.12 -74.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307561300.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.746 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds