Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.51138 * 2 1 4 4 O 1.42963 * 109.51484 * 120.10480 * 2 1 3 5 5 C 1.42962 * 114.16411 * 182.54990 * 4 2 1 6 6 C 1.53293 * 109.22724 * 297.41958 * 5 4 2 7 7 N 1.47156 * 108.38112 * 52.30660 * 6 5 4 8 8 C 1.36934 * 120.98436 * 129.44751 * 7 6 5 9 9 H 1.07993 * 120.00670 * 145.97687 * 8 7 6 10 10 C 1.38820 * 119.99255 * 325.97580 * 8 7 6 11 11 N 1.31613 * 120.00297 * 342.67958 * 10 8 7 12 12 Si 1.86798 * 119.99396 * 162.68069 * 10 8 7 13 13 H 1.48498 * 109.47260 * 60.00026 * 12 10 8 14 14 H 1.48506 * 109.46911 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47438 * 299.99550 * 12 10 8 16 16 C 1.47156 * 118.03433 * 309.45882 * 7 6 5 17 17 H 1.09002 * 109.68281 * 290.81852 * 16 7 6 18 18 C 1.50701 * 109.67963 * 170.26311 * 16 7 6 19 19 N 1.34775 * 119.99572 * 144.89620 * 18 16 7 20 20 O 1.21284 * 119.99960 * 324.89332 * 18 16 7 21 21 H 1.09001 * 109.46825 * 299.89248 * 1 2 3 22 22 H 1.08995 * 109.47605 * 59.89644 * 1 2 3 23 23 H 1.09006 * 109.46919 * 179.89479 * 1 2 3 24 24 H 1.08996 * 109.51046 * 57.34955 * 5 4 2 25 25 H 1.09003 * 109.50669 * 177.49225 * 5 4 2 26 26 H 1.09001 * 109.67966 * 172.02265 * 6 5 4 27 27 H 1.08992 * 109.68139 * 292.57887 * 6 5 4 28 28 H 0.97001 * 119.99580 * 180.02562 * 11 10 8 29 29 H 0.97001 * 120.00607 * 359.97438 * 19 18 16 30 30 H 0.97003 * 119.99846 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 8 2.0076 -0.6759 1.1657 5 6 3.4313 -0.6840 1.2955 6 6 4.0416 -1.4440 0.1124 7 7 3.5022 -0.8748 -1.1328 8 6 4.3336 -0.4956 -2.1527 9 1 4.0147 -0.6055 -3.1786 10 6 5.5864 0.0300 -1.8677 11 7 5.8516 0.4813 -0.6602 12 14 6.8957 0.0968 -3.1983 13 1 6.4086 0.9244 -4.3311 14 1 8.1350 0.6984 -2.6435 15 1 7.1845 -1.2785 -3.6783 16 6 2.0430 -0.7250 -1.2495 17 1 1.5775 -1.7080 -1.3207 18 6 1.7125 0.0840 -2.4773 19 7 0.6051 -0.1979 -3.1920 20 8 2.4429 0.9886 -2.8222 21 1 -0.3633 0.5122 0.8910 22 1 -0.3634 0.5154 -0.8890 23 1 -0.3633 -1.0277 -0.0019 24 1 3.8022 0.3409 1.3003 25 1 3.7090 -1.1769 2.2272 26 1 5.1261 -1.3350 0.1262 27 1 3.7774 -2.4994 0.1784 28 1 6.7269 0.8489 -0.4613 29 1 0.0211 -0.9217 -2.9164 30 1 0.3926 0.3225 -3.9825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307578632.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = -53.373059 kcal Electronic energy + Delta-G solvation = -15516.655800 eV Core-core repulsion = 12927.050778 eV Total energy + Delta-G solvation = -2589.605023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.36849 -37.47730 -34.31021 -33.12635 -31.93803 -30.90367 -27.81398 -26.18562 -23.49678 -21.84407 -20.65841 -19.24910 -17.27579 -16.38876 -16.04572 -15.50182 -14.87015 -14.44618 -14.02329 -13.64329 -13.21037 -12.94152 -12.43653 -12.17872 -11.98126 -11.63335 -11.08599 -10.88252 -10.68304 -10.42497 -10.21017 -9.98888 -9.58589 -9.18101 -8.92051 -8.87906 -8.21810 -6.53399 -5.74332 -3.21521 3.42533 3.46769 3.49308 3.52672 4.11051 4.49192 4.59928 5.28560 5.44311 5.57010 5.71808 5.74550 5.86333 6.02476 6.14652 6.33178 6.42981 6.50299 6.56455 6.66165 7.15490 7.34247 7.37327 7.86676 7.94384 8.05628 8.47215 9.08691 9.18921 9.78744 10.36312 11.33963 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031581 B = 0.014375 C = 0.010732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.391573 B = 1947.387983 C = 2608.386848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 H 0.060 0.940 4 O -0.393 6.393 5 C 0.049 3.951 6 C 0.132 3.868 7 N -0.577 5.577 8 C -0.227 4.227 9 H 0.064 0.936 10 C 0.008 3.992 11 N -0.901 5.901 12 Si 0.905 3.095 13 H -0.282 1.282 14 H -0.291 1.291 15 H -0.284 1.284 16 C 0.124 3.876 17 H 0.050 0.950 18 C 0.514 3.486 19 N -0.871 5.871 20 O -0.495 6.495 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.012 0.988 28 H 0.253 0.747 29 H 0.393 0.607 30 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 -3.264 0.436 10.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.024 3.976 3 H 0.078 0.922 4 O -0.312 6.312 5 C -0.029 4.029 6 C 0.006 3.994 7 N -0.302 5.302 8 C -0.356 4.356 9 H 0.082 0.918 10 C -0.191 4.191 11 N -0.545 5.545 12 Si 0.735 3.265 13 H -0.208 1.208 14 H -0.217 1.217 15 H -0.211 1.211 16 C 0.014 3.986 17 H 0.067 0.933 18 C 0.298 3.702 19 N -0.438 5.438 20 O -0.365 6.365 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.123 0.877 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.220 0.780 30 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.998 -2.692 0.556 9.408 hybrid contribution 0.500 0.157 -1.011 1.139 sum -8.498 -2.534 -0.456 8.880 Atomic orbital electron populations 1.21842 0.94316 1.02253 1.01981 1.22310 0.93248 0.95880 0.86203 0.92214 1.87745 1.23052 1.77838 1.42561 1.23065 0.79434 1.01785 0.98600 1.21542 1.01608 0.92134 0.84071 1.44157 0.97832 1.71611 1.16639 1.18951 0.95192 1.34722 0.86735 0.91803 1.25092 1.00107 0.97237 0.96628 1.69951 1.21848 1.42532 1.20204 0.86322 0.80882 0.77684 0.81600 1.20811 1.21662 1.21104 1.21302 0.90140 0.95753 0.91435 0.93275 1.20631 0.79949 0.84753 0.84900 1.44097 1.27919 1.39599 1.32138 1.90786 1.46734 1.29970 1.69009 0.92186 0.91533 0.92054 0.91971 0.90567 0.87698 0.96995 0.93684 0.77999 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.41 37.16 0.35 -1.83 16 2 C 0.08 1.70 2.84 -26.58 -0.08 1.62 16 3 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 4 O -0.39 -8.30 10.38 -35.23 -0.37 -8.66 16 5 C 0.05 1.06 6.98 37.31 0.26 1.32 16 6 C 0.13 3.17 5.98 -3.53 -0.02 3.15 16 7 N -0.58 -14.92 3.00 -165.61 -0.50 -15.41 16 8 C -0.23 -6.48 7.27 -15.06 -0.11 -6.59 16 9 H 0.06 1.88 6.85 -52.49 -0.36 1.53 16 10 C 0.01 0.23 4.95 -17.43 -0.09 0.14 16 11 N -0.90 -26.40 11.35 55.49 0.63 -25.77 16 12 Si 0.91 22.86 29.59 -169.99 -5.03 17.83 16 13 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 16 C 0.12 2.67 2.91 -68.57 -0.20 2.47 16 17 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 18 C 0.51 10.78 5.70 -10.99 -0.06 10.71 16 19 N -0.87 -12.60 8.41 31.22 0.26 -12.34 16 20 O -0.49 -12.97 15.20 5.55 0.08 -12.88 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.07 0.90 7.13 -51.93 -0.37 0.53 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.11 2.77 5.76 -51.93 -0.30 2.47 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.39 4.34 8.81 -40.82 -0.36 3.98 16 30 H 0.39 5.00 8.93 -40.82 -0.36 4.63 16 LS Contribution 248.04 15.07 3.74 3.74 Total: -1.00 -33.56 248.04 -4.97 -38.52 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.84 Total: 3.98 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 0.06 Total: 10.99 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.40 Total: -53.52 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.28 Total: -21.55 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.56 -4.97 -38.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307578632.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.852 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds