Wall clock time and date at job start Mon Mar 30 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.51138 * 2 1 4 4 O 1.42963 * 109.51484 * 120.10480 * 2 1 3 5 5 C 1.42962 * 114.16411 * 182.54990 * 4 2 1 6 6 C 1.53293 * 109.22724 * 297.41958 * 5 4 2 7 7 N 1.47156 * 108.38112 * 52.30660 * 6 5 4 8 8 C 1.36934 * 120.98436 * 129.44751 * 7 6 5 9 9 H 1.07993 * 120.00670 * 145.97687 * 8 7 6 10 10 C 1.38820 * 119.99255 * 325.97580 * 8 7 6 11 11 N 1.31613 * 120.00297 * 342.67958 * 10 8 7 12 12 Si 1.86798 * 119.99396 * 162.68069 * 10 8 7 13 13 H 1.48498 * 109.47260 * 60.00026 * 12 10 8 14 14 H 1.48506 * 109.46911 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47438 * 299.99550 * 12 10 8 16 16 C 1.47156 * 118.03433 * 309.45882 * 7 6 5 17 17 H 1.09002 * 109.68281 * 290.81852 * 16 7 6 18 18 C 1.50701 * 109.67963 * 170.26311 * 16 7 6 19 19 N 1.34775 * 119.99572 * 144.89620 * 18 16 7 20 20 O 1.21284 * 119.99960 * 324.89332 * 18 16 7 21 21 H 1.09001 * 109.46825 * 299.89248 * 1 2 3 22 22 H 1.08995 * 109.47605 * 59.89644 * 1 2 3 23 23 H 1.09006 * 109.46919 * 179.89479 * 1 2 3 24 24 H 1.08996 * 109.51046 * 57.34955 * 5 4 2 25 25 H 1.09003 * 109.50669 * 177.49225 * 5 4 2 26 26 H 1.09001 * 109.67966 * 172.02265 * 6 5 4 27 27 H 1.08992 * 109.68139 * 292.57887 * 6 5 4 28 28 H 0.97001 * 119.99580 * 180.02562 * 11 10 8 29 29 H 0.97001 * 120.00607 * 359.97438 * 19 18 16 30 30 H 0.97003 * 119.99846 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 8 2.0076 -0.6759 1.1657 5 6 3.4313 -0.6840 1.2955 6 6 4.0416 -1.4440 0.1124 7 7 3.5022 -0.8748 -1.1328 8 6 4.3336 -0.4956 -2.1527 9 1 4.0147 -0.6055 -3.1786 10 6 5.5864 0.0300 -1.8677 11 7 5.8516 0.4813 -0.6602 12 14 6.8957 0.0968 -3.1983 13 1 6.4086 0.9244 -4.3311 14 1 8.1350 0.6984 -2.6435 15 1 7.1845 -1.2785 -3.6783 16 6 2.0430 -0.7250 -1.2495 17 1 1.5775 -1.7080 -1.3207 18 6 1.7125 0.0840 -2.4773 19 7 0.6051 -0.1979 -3.1920 20 8 2.4429 0.9886 -2.8222 21 1 -0.3633 0.5122 0.8910 22 1 -0.3634 0.5154 -0.8890 23 1 -0.3633 -1.0277 -0.0019 24 1 3.8022 0.3409 1.3003 25 1 3.7090 -1.1769 2.2272 26 1 5.1261 -1.3350 0.1262 27 1 3.7774 -2.4994 0.1784 28 1 6.7269 0.8489 -0.4613 29 1 0.0211 -0.9217 -2.9164 30 1 0.3926 0.3225 -3.9825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307578632.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:46 Heat of formation + Delta-G solvation = -81.323518 kcal Electronic energy + Delta-G solvation = -15517.867823 eV Core-core repulsion = 12927.050778 eV Total energy + Delta-G solvation = -2590.817046 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07257 -39.18442 -36.23291 -34.73602 -33.50844 -32.88533 -29.53870 -27.96515 -25.40894 -23.52579 -22.37446 -20.96563 -19.10630 -18.05291 -17.65593 -17.22420 -16.80608 -16.15812 -15.83140 -15.44174 -14.90496 -14.80182 -14.26938 -13.71065 -13.42956 -13.17039 -13.05599 -12.64263 -12.59525 -12.25443 -12.16471 -11.85555 -11.42740 -10.98020 -10.71637 -10.44084 -10.22019 -8.54691 -7.87213 -5.36633 1.41807 1.45258 1.50414 1.78819 2.50278 2.62830 2.95686 3.29549 3.55465 3.99021 4.15434 4.25865 4.37956 4.54666 4.60798 4.70630 4.79260 4.89076 5.03821 5.23641 5.36541 5.41735 5.64621 6.07200 6.30265 6.37398 6.64768 7.11240 7.58001 7.73095 8.27380 9.18182 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031581 B = 0.014375 C = 0.010732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.391573 B = 1947.387983 C = 2608.386848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 H 0.018 0.982 4 O -0.387 6.387 5 C 0.059 3.941 6 C 0.129 3.871 7 N -0.598 5.598 8 C -0.227 4.227 9 H 0.050 0.950 10 C -0.045 4.045 11 N -0.925 5.925 12 Si 0.960 3.040 13 H -0.290 1.290 14 H -0.289 1.289 15 H -0.273 1.273 16 C 0.115 3.885 17 H 0.080 0.920 18 C 0.515 3.485 19 N -0.836 5.836 20 O -0.558 6.558 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.026 0.974 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.249 0.751 29 H 0.415 0.585 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 -4.519 0.221 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.023 3.977 3 H 0.036 0.964 4 O -0.306 6.306 5 C -0.018 4.018 6 C 0.004 3.996 7 N -0.324 5.324 8 C -0.357 4.357 9 H 0.068 0.932 10 C -0.241 4.241 11 N -0.571 5.571 12 Si 0.789 3.211 13 H -0.217 1.217 14 H -0.214 1.214 15 H -0.199 1.199 16 C 0.006 3.994 17 H 0.097 0.903 18 C 0.299 3.701 19 N -0.403 5.403 20 O -0.433 6.433 21 H 0.090 0.910 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.045 0.955 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.247 0.753 30 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.054 -3.999 0.328 11.760 hybrid contribution 0.974 0.500 -0.963 1.458 sum -10.080 -3.500 -0.635 10.689 Atomic orbital electron populations 1.21814 0.89641 1.04411 1.03394 1.22396 0.96670 0.93290 0.85344 0.96371 1.87758 1.22168 1.77626 1.43014 1.22901 0.79918 0.99726 0.99298 1.21520 1.00273 0.93268 0.84513 1.44309 0.99579 1.71974 1.16563 1.18962 0.95942 1.33907 0.86911 0.93237 1.25749 1.01944 0.97828 0.98531 1.70083 1.21795 1.43731 1.21488 0.85467 0.78702 0.77881 0.79078 1.21700 1.21443 1.19852 1.21553 0.87906 0.97375 0.92576 0.90302 1.20588 0.80668 0.83781 0.85017 1.43653 1.25864 1.39525 1.31257 1.90769 1.49422 1.32632 1.70524 0.91025 0.90010 0.89414 0.95528 0.87245 0.90431 0.95109 0.94199 0.75342 0.76316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.41 71.98 0.68 -2.86 16 2 C 0.08 3.25 2.84 30.69 0.09 3.34 16 3 H 0.02 0.86 8.13 -2.39 -0.02 0.84 16 4 O -0.39 -15.66 10.38 -148.98 -1.55 -17.21 16 5 C 0.06 2.57 6.98 72.08 0.50 3.07 16 6 C 0.13 6.22 5.98 86.35 0.52 6.73 16 7 N -0.60 -30.95 3.00 -677.85 -2.03 -32.99 16 8 C -0.23 -13.18 7.27 84.04 0.61 -12.57 16 9 H 0.05 2.97 6.85 -2.91 -0.02 2.95 16 10 C -0.04 -2.64 4.95 84.86 0.42 -2.22 16 11 N -0.93 -55.84 11.35 21.65 0.25 -55.60 16 12 Si 0.96 47.91 29.59 68.60 2.03 49.93 16 13 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 14 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 15 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 16 C 0.12 4.79 2.91 44.22 0.13 4.92 16 17 H 0.08 2.83 8.11 -2.39 -0.02 2.81 16 18 C 0.52 20.96 5.70 87.66 0.50 21.46 16 19 N -0.84 -21.55 8.41 -173.53 -1.46 -23.01 16 20 O -0.56 -29.57 15.20 -3.04 -0.05 -29.61 16 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.08 1.89 7.13 -2.39 -0.02 1.87 16 23 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 26 H 0.08 4.19 5.76 -2.39 -0.01 4.17 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.42 7.29 8.81 -92.71 -0.82 6.48 16 30 H 0.41 9.10 8.93 -92.71 -0.83 8.28 16 Total: -1.00 -75.03 248.04 0.15 -74.87 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -0.48 Total: 11.73 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 3.44 Total: 21.87 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -3.25 Total: -111.59 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -1.59 Total: -46.82 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.93 kcal Total: -75.03 0.15 -74.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307578632.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.449 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds