Wall clock time and date at job start Mon Mar 30 2020 02:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00221 * 2 1 4 4 H 1.09004 * 110.91557 * 32.44537 * 3 2 1 5 5 C 1.55158 * 111.00541 * 156.34512 * 3 2 1 6 6 C 1.54335 * 103.02154 * 153.37886 * 5 3 2 7 7 H 1.09005 * 109.77503 * 97.49551 * 6 5 3 8 8 C 1.50701 * 109.99541 * 218.66728 * 6 5 3 9 9 N 1.34772 * 119.99917 * 279.32411 * 8 6 5 10 10 O 1.21280 * 119.99543 * 99.32223 * 8 6 5 11 11 N 1.47023 * 107.26542 * 338.14831 * 6 5 3 12 12 C 1.36937 * 125.64930 * 178.84991 * 11 6 5 13 13 H 1.08006 * 119.99678 * 342.94051 * 12 11 6 14 14 C 1.38809 * 120.00141 * 162.93643 * 12 11 6 15 15 N 1.31615 * 120.00083 * 331.98364 * 14 12 11 16 16 Si 1.86804 * 119.99980 * 151.97727 * 14 12 11 17 17 H 1.48500 * 109.47066 * 270.00565 * 16 14 12 18 18 H 1.48505 * 109.46926 * 30.00213 * 16 14 12 19 19 H 1.48494 * 109.47047 * 150.00047 * 16 14 12 20 20 C 1.47421 * 108.70308 * 358.57948 * 11 6 5 21 21 H 1.08996 * 109.47498 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47477 * 300.00629 * 1 2 3 23 23 H 1.09003 * 109.46696 * 60.00062 * 1 2 3 24 24 H 1.08996 * 110.72536 * 271.93900 * 5 3 2 25 25 H 1.09003 * 110.71609 * 35.03918 * 5 3 2 26 26 H 0.96996 * 120.00201 * 0.02562 * 9 8 6 27 27 H 0.96997 * 119.99911 * 179.97438 * 9 8 6 28 28 H 0.97001 * 119.99973 * 353.94949 * 15 14 12 29 29 H 1.08994 * 110.36959 * 143.19857 * 20 11 6 30 30 H 1.09000 * 110.36818 * 265.41266 * 20 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3835 2.0104 0.5463 5 6 3.4485 1.2738 0.5812 6 6 4.1251 2.4827 -0.0991 7 1 4.1036 3.3424 0.5707 8 6 5.5492 2.1427 -0.4559 9 7 6.5120 2.2009 0.4853 10 8 5.8288 1.8168 -1.5902 11 7 3.3612 2.7806 -1.3195 12 6 3.6238 3.7987 -2.1968 13 1 4.2575 4.6201 -1.8967 14 6 3.0756 3.7748 -3.4718 15 7 2.7924 2.6244 -4.0450 16 14 2.7396 5.3756 -4.3741 17 1 1.3647 5.8412 -4.0610 18 1 3.7206 6.4031 -3.9413 19 1 2.8665 5.1553 -5.8371 20 6 2.2697 1.7978 -1.4456 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 3.4299 1.3982 1.6638 25 1 3.9539 0.3470 0.3095 26 1 6.2883 2.4611 1.3926 27 1 7.4286 1.9817 0.2557 28 1 3.0466 1.7928 -3.6152 29 1 1.3763 2.2729 -1.8506 30 1 2.5782 0.9677 -2.0812 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307691604.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:13 Heat of formation + Delta-G solvation = -56.008524 kcal Electronic energy + Delta-G solvation = -15059.969755 eV Core-core repulsion = 12470.250450 eV Total energy + Delta-G solvation = -2589.719305 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.26418 -37.73654 -35.68314 -33.07844 -32.34241 -29.05089 -28.11361 -26.19276 -24.24496 -21.84292 -20.48907 -19.34112 -17.73139 -16.69273 -16.41042 -15.63205 -15.08027 -14.62777 -14.27537 -13.77202 -13.43560 -13.26404 -12.95430 -12.15520 -11.96059 -11.48980 -11.14594 -10.98525 -10.70137 -10.63805 -10.25948 -9.99413 -9.59093 -9.08005 -9.05170 -9.03225 -8.34571 -6.96761 -6.02320 -3.09128 3.44384 3.54083 3.57144 3.74132 4.05412 4.18472 4.65288 5.13757 5.23365 5.36617 5.46707 5.51003 5.61440 5.68099 5.76625 5.86513 5.93060 6.08483 6.20389 6.51671 6.83437 6.99251 7.35409 7.57386 7.73963 7.99595 8.52527 9.03051 9.10861 9.86100 10.32806 11.30522 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.013853 C = 0.009402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.141260 B = 2020.714335 C = 2977.444910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.069 3.931 4 H 0.071 0.929 5 C -0.112 4.112 6 C 0.141 3.859 7 H 0.061 0.939 8 C 0.490 3.510 9 N -0.873 5.873 10 O -0.515 6.515 11 N -0.566 5.566 12 C -0.331 4.331 13 H 0.066 0.934 14 C -0.022 4.022 15 N -0.912 5.912 16 Si 1.071 2.929 17 H -0.293 1.293 18 H -0.293 1.293 19 H -0.290 1.290 20 C 0.128 3.872 21 H 0.080 0.920 22 H 0.037 0.963 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.392 0.608 27 H 0.386 0.614 28 H 0.273 0.727 29 H 0.057 0.943 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 -1.636 12.333 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.010 3.990 4 H 0.089 0.911 5 C -0.150 4.150 6 C 0.029 3.971 7 H 0.078 0.922 8 C 0.273 3.727 9 N -0.438 5.438 10 O -0.387 6.387 11 N -0.291 5.291 12 C -0.459 4.459 13 H 0.084 0.916 14 C -0.225 4.225 15 N -0.552 5.552 16 Si 0.900 3.100 17 H -0.221 1.221 18 H -0.219 1.219 19 H -0.216 1.216 20 C 0.002 3.998 21 H 0.099 0.901 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.219 0.781 27 H 0.215 0.785 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.664 -1.260 10.024 10.239 hybrid contribution 1.063 -0.427 1.727 2.072 sum -0.601 -1.687 11.751 11.887 Atomic orbital electron populations 1.22720 0.81507 1.02125 1.00006 1.87845 1.19357 1.27799 1.95038 1.23435 0.93489 0.83771 0.98316 0.91130 1.22491 0.95066 0.98419 0.99009 1.21205 0.88016 0.95554 0.92346 0.92206 1.22483 0.88966 0.76074 0.85179 1.44250 1.11338 1.74795 1.13456 1.90721 1.82828 1.44791 1.20326 1.44534 1.26944 1.32839 1.24788 1.19709 1.34593 0.96771 0.94810 0.91593 1.25770 0.99993 1.03758 0.92953 1.70683 1.47961 0.98417 1.38116 0.83444 0.76109 0.74473 0.75937 1.22069 1.21928 1.21624 1.21978 0.92196 0.92871 0.92743 0.90102 0.94456 0.93753 0.90660 0.90438 0.78123 0.78471 0.91492 0.92480 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.89 101.05 1.10 1.56 16 2 O -0.38 -6.89 10.51 -35.23 -0.37 -7.26 16 3 C 0.07 1.29 3.49 -24.58 -0.09 1.21 16 4 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 5 C -0.11 -1.95 6.21 -24.89 -0.15 -2.10 16 6 C 0.14 2.92 3.52 -68.10 -0.24 2.68 16 7 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 8 C 0.49 10.49 7.01 -10.99 -0.08 10.41 16 9 N -0.87 -12.96 8.87 31.22 0.28 -12.68 16 10 O -0.51 -14.09 17.01 5.56 0.09 -14.00 16 11 N -0.57 -14.72 2.71 -163.87 -0.44 -15.16 16 12 C -0.33 -9.66 9.31 -15.06 -0.14 -9.80 16 13 H 0.07 1.93 7.97 -52.48 -0.42 1.51 16 14 C -0.02 -0.65 5.09 -17.43 -0.09 -0.74 16 15 N -0.91 -28.99 12.93 55.49 0.72 -28.27 16 16 Si 1.07 26.29 30.00 -169.99 -5.10 21.19 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 C 0.13 3.11 5.04 -2.53 -0.01 3.10 16 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.44 8.11 -51.93 -0.42 0.02 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 1.44 7.84 -51.93 -0.41 1.03 16 26 H 0.39 4.28 8.83 -40.82 -0.36 3.92 16 27 H 0.39 5.23 8.93 -40.82 -0.36 4.86 16 28 H 0.27 8.95 6.05 -40.82 -0.25 8.70 16 29 H 0.06 1.47 7.94 -51.93 -0.41 1.06 16 30 H 0.04 1.05 6.80 -51.93 -0.35 0.70 16 LS Contribution 256.86 15.07 3.87 3.87 Total: -1.00 -36.56 256.86 -4.53 -41.09 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.88 Total: 4.90 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 0.30 Total: 6.32 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.55 Total: -56.12 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.28 Total: -21.25 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.10 Total: 21.19 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -36.56 -4.53 -41.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307691604.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.915 kcal (2) G-P(sol) polarization free energy of solvation -36.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds