Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47129 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.82321 * 59.11513 * 5 4 3 7 7 C 1.54387 * 109.82956 * 179.97438 * 5 4 3 8 8 C 1.55307 * 102.25071 * 140.87086 * 7 5 4 9 9 C 1.54944 * 100.94367 * 325.86797 * 8 7 5 10 10 H 1.08995 * 110.30927 * 277.43310 * 9 8 7 11 11 C 1.50701 * 110.30853 * 155.35832 * 9 8 7 12 12 H 1.07993 * 120.00179 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99721 * 179.97438 * 11 9 8 14 14 N 1.31518 * 119.99853 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00067 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47046 * 59.99898 * 15 13 11 17 17 H 1.48500 * 109.47273 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47102 * 300.00008 * 15 13 11 19 19 O 1.43228 * 109.83316 * 298.13314 * 5 4 3 20 20 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 21 21 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 22 22 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 24 24 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 25 25 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 26 26 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 27 27 H 1.09008 * 109.47036 * 60.70264 * 6 5 4 28 28 H 1.09000 * 109.47568 * 180.69776 * 6 5 4 29 29 H 1.08995 * 109.47008 * 300.69902 * 6 5 4 30 30 H 1.09004 * 110.84702 * 259.06005 * 7 5 4 31 31 H 1.09001 * 110.84565 * 22.47867 * 7 5 4 32 32 H 1.09003 * 111.12577 * 83.78550 * 8 7 5 33 33 H 1.08998 * 111.12544 * 207.94252 * 8 7 5 34 34 H 0.97000 * 119.99405 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 3.6934 3.3564 1.2365 7 6 5.6976 2.4699 0.0026 8 6 6.1127 3.6202 -0.9547 9 6 4.9407 3.5972 -1.9679 10 1 5.1086 2.8296 -2.7233 11 6 4.7865 4.9469 -2.6201 12 1 5.4504 5.7553 -2.3519 13 6 3.7984 5.1495 -3.5602 14 7 2.9908 4.1645 -3.8880 15 14 3.6076 6.8223 -4.3692 16 1 4.8609 7.1717 -5.0851 17 1 2.4806 6.7793 -5.3353 18 1 3.3293 7.8459 -3.3300 19 8 3.7756 3.2849 -1.1868 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6887 1.8463 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 3.8568 0.6438 0.8908 26 1 3.8575 0.6435 -0.8891 27 1 4.0131 2.8307 2.1363 28 1 4.1300 4.3551 1.2249 29 1 2.6063 3.4351 1.2285 30 1 6.0977 2.6344 1.0031 31 1 6.0163 1.5030 -0.3867 32 1 6.1575 4.5732 -0.4275 33 1 7.0607 3.4000 -1.4455 34 1 2.2954 4.3072 -4.5490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308126950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = -107.025605 kcal Electronic energy + Delta-G solvation = -15137.148963 eV Core-core repulsion = 12648.757734 eV Total energy + Delta-G solvation = -2488.391228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.83468 -37.27050 -33.40210 -31.82672 -30.89210 -28.59457 -26.56285 -25.99783 -23.90417 -22.00410 -20.25303 -18.83080 -16.49759 -16.16783 -15.66830 -15.01149 -14.66595 -14.61898 -14.10432 -13.21999 -13.04339 -12.44336 -12.12171 -11.99083 -11.76137 -11.59456 -11.31674 -10.91317 -10.77923 -10.68553 -10.59619 -10.34201 -10.15040 -9.78954 -9.65497 -9.21336 -9.02712 -8.54838 -7.88045 -5.98889 -4.11705 3.32717 3.37312 3.39600 4.13231 4.43438 4.93129 5.35645 5.44489 5.48700 5.54251 5.57669 5.67924 5.76499 5.82557 5.88283 5.98242 6.11235 6.15387 6.20395 6.35943 6.51388 6.55262 6.66135 6.69182 6.78871 6.88329 7.02037 7.54676 7.62651 7.90948 8.29547 8.68185 9.06037 9.58953 11.08445 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.009643 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.907040 B = 2903.098389 C = 3574.724182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.401 6.401 3 C 0.064 3.936 4 C -0.112 4.112 5 C 0.099 3.901 6 C -0.149 4.149 7 C -0.145 4.145 8 C -0.146 4.146 9 C 0.210 3.790 10 H 0.028 0.972 11 C -0.533 4.533 12 H 0.061 0.939 13 C 0.078 3.922 14 N -0.864 5.864 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 O -0.349 6.349 20 H 0.035 0.965 21 H 0.041 0.959 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -4.737 8.039 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.320 6.320 3 C -0.012 4.012 4 C -0.150 4.150 5 C 0.057 3.943 6 C -0.206 4.206 7 C -0.183 4.183 8 C -0.184 4.184 9 C 0.155 3.845 10 H 0.046 0.954 11 C -0.570 4.570 12 H 0.079 0.921 13 C -0.128 4.128 14 N -0.500 5.500 15 Si 0.718 3.282 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 O -0.269 6.269 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.097 0.903 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.895 -4.908 7.861 9.310 hybrid contribution -0.225 1.056 -0.366 1.140 sum -1.120 -3.852 7.495 8.501 Atomic orbital electron populations 1.22650 0.81843 1.01879 0.99897 1.87803 1.19135 1.29537 1.95512 1.22615 0.94175 0.83366 1.01013 1.21815 0.93539 0.97589 1.02056 1.21788 0.92626 0.90471 0.89370 1.22096 1.01552 1.00604 0.96384 1.23121 0.95649 0.99640 0.99912 1.23305 1.00313 0.96994 0.97816 1.20517 0.79977 0.95852 0.88123 0.95388 1.21078 1.17097 0.96906 1.21953 0.92095 1.25071 0.95269 0.96562 0.95886 1.70029 1.17784 1.31194 1.31011 0.86708 0.77681 0.84634 0.79205 1.20118 1.21220 1.20142 1.88836 1.33359 1.74231 1.30487 0.94618 0.94029 0.90306 0.91450 0.93805 0.91945 0.91200 0.93126 0.92283 0.92563 0.91814 0.91664 0.91713 0.92077 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.40 -7.07 10.70 -35.23 -0.38 -7.45 16 3 C 0.06 1.18 5.44 37.16 0.20 1.39 16 4 C -0.11 -2.07 4.73 -26.74 -0.13 -2.19 16 5 C 0.10 1.96 0.93 -89.90 -0.08 1.87 16 6 C -0.15 -2.61 8.37 37.16 0.31 -2.30 16 7 C -0.15 -2.63 6.09 -24.78 -0.15 -2.78 16 8 C -0.15 -3.05 6.53 -24.48 -0.16 -3.21 16 9 C 0.21 5.46 3.22 -26.86 -0.09 5.38 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.53 -15.03 8.79 -34.44 -0.30 -15.33 16 12 H 0.06 1.66 7.76 -52.49 -0.41 1.26 16 13 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 14 N -0.86 -25.77 13.05 55.43 0.72 -25.05 16 15 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 O -0.35 -8.94 9.47 -35.23 -0.33 -9.27 16 20 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 1.44 7.75 -51.93 -0.40 1.04 16 24 H 0.04 0.74 6.42 -51.93 -0.33 0.41 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.98 6.41 -51.93 -0.33 0.65 16 30 H 0.06 0.99 7.82 -51.93 -0.41 0.59 16 31 H 0.06 1.11 7.85 -51.93 -0.41 0.70 16 32 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 278.27 15.07 4.19 4.19 Total: -1.00 -30.64 278.27 -5.84 -36.48 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.65 Total: -1.89 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 0.62 Total: -13.48 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.72 Total: -25.05 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.71 Total: -16.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.64 -5.84 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308126950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.545 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds