Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47129 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.82321 * 59.11513 * 5 4 3 7 7 C 1.54387 * 109.82956 * 179.97438 * 5 4 3 8 8 C 1.55307 * 102.25071 * 140.87086 * 7 5 4 9 9 C 1.54944 * 100.94367 * 325.86797 * 8 7 5 10 10 H 1.08995 * 110.30927 * 277.43310 * 9 8 7 11 11 C 1.50701 * 110.30853 * 155.35832 * 9 8 7 12 12 H 1.07993 * 120.00179 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99721 * 179.97438 * 11 9 8 14 14 N 1.31518 * 119.99853 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00067 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47046 * 59.99898 * 15 13 11 17 17 H 1.48500 * 109.47273 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47102 * 300.00008 * 15 13 11 19 19 O 1.43228 * 109.83316 * 298.13314 * 5 4 3 20 20 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 21 21 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 22 22 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 24 24 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 25 25 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 26 26 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 27 27 H 1.09008 * 109.47036 * 60.70264 * 6 5 4 28 28 H 1.09000 * 109.47568 * 180.69776 * 6 5 4 29 29 H 1.08995 * 109.47008 * 300.69902 * 6 5 4 30 30 H 1.09004 * 110.84702 * 259.06005 * 7 5 4 31 31 H 1.09001 * 110.84565 * 22.47867 * 7 5 4 32 32 H 1.09003 * 111.12577 * 83.78550 * 8 7 5 33 33 H 1.08998 * 111.12544 * 207.94252 * 8 7 5 34 34 H 0.97000 * 119.99405 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 3.6934 3.3564 1.2365 7 6 5.6976 2.4699 0.0026 8 6 6.1127 3.6202 -0.9547 9 6 4.9407 3.5972 -1.9679 10 1 5.1086 2.8296 -2.7233 11 6 4.7865 4.9469 -2.6201 12 1 5.4504 5.7553 -2.3519 13 6 3.7984 5.1495 -3.5602 14 7 2.9908 4.1645 -3.8880 15 14 3.6076 6.8223 -4.3692 16 1 4.8609 7.1717 -5.0851 17 1 2.4806 6.7793 -5.3353 18 1 3.3293 7.8459 -3.3300 19 8 3.7756 3.2849 -1.1868 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6887 1.8463 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 3.8568 0.6438 0.8908 26 1 3.8575 0.6435 -0.8891 27 1 4.0131 2.8307 2.1363 28 1 4.1300 4.3551 1.2249 29 1 2.6063 3.4351 1.2285 30 1 6.0977 2.6344 1.0031 31 1 6.0163 1.5030 -0.3867 32 1 6.1575 4.5732 -0.4275 33 1 7.0607 3.4000 -1.4455 34 1 2.2954 4.3072 -4.5490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308126950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = -127.362374 kcal Electronic energy + Delta-G solvation = -15138.030831 eV Core-core repulsion = 12648.757734 eV Total energy + Delta-G solvation = -2489.273097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.48768 -38.66812 -35.26112 -33.72164 -32.59593 -30.11417 -28.36357 -27.22877 -25.60438 -23.67907 -22.00054 -20.42276 -18.60181 -17.59373 -17.11516 -16.62154 -16.58718 -15.98510 -15.72845 -14.93410 -14.47453 -14.19888 -13.73144 -13.51208 -13.47755 -13.04210 -12.80145 -12.65647 -12.41014 -12.25750 -12.16565 -12.03403 -11.98472 -11.39367 -11.23507 -10.93249 -10.68359 -10.57023 -9.79669 -8.13977 -6.34638 1.39588 1.42523 1.50041 2.40676 2.82291 3.04995 3.57321 3.88897 4.02260 4.19675 4.24315 4.29011 4.46206 4.49816 4.56469 4.60488 4.69555 4.73649 4.79456 4.88607 4.98733 5.02643 5.07201 5.13398 5.26507 5.29001 5.54895 5.63023 5.77448 6.20714 6.22455 6.64726 7.11430 7.41644 8.93653 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.009643 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.907040 B = 2903.098389 C = 3574.724182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.073 3.927 4 C -0.108 4.108 5 C 0.082 3.918 6 C -0.143 4.143 7 C -0.134 4.134 8 C -0.139 4.139 9 C 0.202 3.798 10 H -0.012 1.012 11 C -0.554 4.554 12 H 0.064 0.936 13 C 0.022 3.978 14 N -0.904 5.904 15 Si 0.960 3.040 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.270 1.270 19 O -0.384 6.384 20 H 0.054 0.946 21 H 0.033 0.967 22 H 0.106 0.894 23 H 0.025 0.975 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -4.574 9.872 10.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.004 4.004 4 C -0.145 4.145 5 C 0.042 3.958 6 C -0.201 4.201 7 C -0.172 4.172 8 C -0.176 4.176 9 C 0.146 3.854 10 H 0.005 0.995 11 C -0.591 4.591 12 H 0.082 0.918 13 C -0.180 4.180 14 N -0.541 5.541 15 Si 0.784 3.216 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.195 1.195 19 O -0.304 6.304 20 H 0.072 0.928 21 H 0.051 0.949 22 H 0.124 0.876 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.426 -4.746 9.707 10.813 hybrid contribution -0.402 0.925 -0.901 1.353 sum -0.829 -3.821 8.805 9.634 Atomic orbital electron populations 1.22917 0.79824 1.03891 1.00399 1.87771 1.21392 1.28828 1.95559 1.22430 0.94421 0.83704 0.99806 1.21771 0.93450 0.96842 1.02465 1.22199 0.94296 0.91018 0.88296 1.22059 1.01195 1.00250 0.96556 1.23112 0.94064 0.98827 1.01166 1.23174 0.98821 0.98455 0.97182 1.20375 0.82404 0.93655 0.88963 0.99451 1.21527 1.17113 0.97997 1.22462 0.91752 1.25967 0.94953 1.00486 0.96609 1.70185 1.18578 1.33496 1.31886 0.85606 0.78005 0.79725 0.78230 1.18822 1.20958 1.19475 1.88746 1.33758 1.75287 1.32644 0.92763 0.94874 0.87603 0.95694 0.91931 0.88640 0.93472 0.89230 0.93167 0.93116 0.88095 0.90803 0.91536 0.90731 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -14.32 10.70 -148.98 -1.59 -15.91 16 3 C 0.07 2.66 5.44 71.98 0.39 3.05 16 4 C -0.11 -3.86 4.73 30.59 0.14 -3.71 16 5 C 0.08 3.17 0.93 -10.32 -0.01 3.16 16 6 C -0.14 -4.66 8.37 71.98 0.60 -4.06 16 7 C -0.13 -4.53 6.09 31.86 0.19 -4.33 16 8 C -0.14 -5.65 6.53 32.05 0.21 -5.44 16 9 C 0.20 10.75 3.22 30.51 0.10 10.85 16 10 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 11 C -0.55 -31.87 8.79 25.60 0.23 -31.64 16 12 H 0.06 3.54 7.76 -2.91 -0.02 3.52 16 13 C 0.02 1.25 5.43 84.65 0.46 1.71 16 14 N -0.90 -55.93 13.05 21.45 0.28 -55.65 16 15 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 O -0.38 -20.14 9.47 -148.98 -1.41 -21.55 16 20 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 22 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.02 1.11 7.75 -2.39 -0.02 1.09 16 24 H 0.06 2.03 6.42 -2.39 -0.02 2.02 16 25 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 27 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.68 6.41 -2.39 -0.02 1.66 16 30 H 0.10 2.68 7.82 -2.39 -0.02 2.66 16 31 H 0.07 2.35 7.85 -2.39 -0.02 2.33 16 32 H 0.07 2.67 8.04 -2.39 -0.02 2.65 16 33 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -68.35 278.27 3.91 -64.44 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.05 Total: 10.43 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 3.56 Total: -28.50 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.28 Total: -55.65 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -3.01 Total: -37.46 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.35 3.91 -64.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308126950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.922 kcal (2) G-P(sol) polarization free energy of solvation -68.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds