Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00103 * 2 1 4 4 C 1.52995 * 109.47406 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47291 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.89581 * 305.93642 * 5 4 3 7 7 C 1.54373 * 109.83067 * 184.99975 * 5 4 3 8 8 C 1.55306 * 102.25261 * 219.13106 * 7 5 4 9 9 C 1.54938 * 100.94191 * 34.13530 * 8 7 5 10 10 H 1.08997 * 110.31095 * 82.57264 * 9 8 7 11 11 C 1.50702 * 110.30872 * 204.63921 * 9 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99942 * 179.71965 * 11 9 8 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 9 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 9 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 O 1.43240 * 109.82711 * 66.86742 * 5 4 3 20 20 H 1.08997 * 109.47038 * 299.99399 * 1 2 3 21 21 H 1.08999 * 109.47291 * 59.99344 * 1 2 3 22 22 H 1.09003 * 109.46913 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46506 * 59.99873 * 3 2 1 24 24 H 1.09005 * 109.47085 * 300.00510 * 3 2 1 25 25 H 1.09002 * 109.46819 * 60.00169 * 4 3 2 26 26 H 1.08996 * 109.47034 * 300.00276 * 4 3 2 27 27 H 1.08999 * 109.47167 * 299.06143 * 6 5 4 28 28 H 1.08997 * 109.47416 * 59.06264 * 6 5 4 29 29 H 1.09002 * 109.46725 * 179.06936 * 6 5 4 30 30 H 1.09003 * 110.84900 * 100.94476 * 7 5 4 31 31 H 1.09002 * 110.85356 * 337.31869 * 7 5 4 32 32 H 1.09004 * 111.12412 * 276.21198 * 8 7 5 33 33 H 1.09000 * 111.15849 * 152.07172 * 8 7 5 34 34 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 6 3.5977 3.4023 -1.1641 7 6 5.6923 2.4726 -0.1272 8 6 6.1835 3.5881 0.8353 9 6 5.0954 3.5265 1.9365 10 1 5.3216 2.7324 2.6480 11 6 4.9952 4.8516 2.6474 12 1 5.6364 5.6704 2.3564 13 6 4.0805 5.0204 3.6653 14 7 3.9893 6.1783 4.2820 15 14 2.9710 3.6042 4.1683 16 1 3.6350 2.8089 5.2321 17 1 1.6850 4.1412 4.6814 18 1 2.7108 2.7370 2.9912 19 8 3.8722 3.2408 1.2397 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6885 1.8463 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.8566 0.6440 -0.8909 26 1 3.8574 0.6436 0.8891 27 1 3.8469 2.9133 -2.1059 28 1 2.5144 3.4761 -1.0686 29 1 4.0330 4.4015 -1.1473 30 1 6.0122 2.6738 -1.1496 31 1 6.0400 1.4939 0.2037 32 1 6.1878 4.5596 0.3410 33 1 7.1672 3.3523 1.2413 34 1 3.3461 6.2969 4.9983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308127498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = -102.162389 kcal Electronic energy + Delta-G solvation = -15252.742585 eV Core-core repulsion = 12764.562242 eV Total energy + Delta-G solvation = -2488.180343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13547 -37.49646 -33.54656 -32.04601 -31.15092 -28.86223 -26.91670 -26.18343 -24.02147 -22.01060 -20.29160 -19.08152 -16.82160 -16.39591 -15.88740 -15.25893 -14.85849 -14.84611 -14.05658 -13.29025 -13.16519 -12.58345 -12.44625 -12.27146 -11.98848 -11.83982 -11.45027 -11.07767 -10.92791 -10.87807 -10.72773 -10.19025 -9.98461 -9.84571 -9.65058 -9.39803 -9.33539 -8.54548 -8.19868 -6.08954 -4.16660 3.39352 3.45159 3.69446 3.93192 4.54323 4.69912 5.17531 5.31043 5.32222 5.37924 5.41089 5.49485 5.57262 5.64390 5.68994 5.77781 5.93465 5.98460 6.03966 6.16088 6.33550 6.36310 6.43430 6.48025 6.59008 6.70874 6.85114 7.24753 7.34074 7.65254 8.37567 8.46071 8.93403 9.55836 11.01780 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.011932 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.856446 B = 2346.122240 C = 3098.070377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.399 6.399 3 C 0.061 3.939 4 C -0.115 4.115 5 C 0.099 3.901 6 C -0.151 4.151 7 C -0.146 4.146 8 C -0.134 4.134 9 C 0.172 3.828 10 H 0.026 0.974 11 C -0.521 4.521 12 H 0.077 0.923 13 C 0.083 3.917 14 N -0.894 5.894 15 Si 0.869 3.131 16 H -0.284 1.284 17 H -0.292 1.292 18 H -0.226 1.226 19 O -0.369 6.369 20 H 0.040 0.960 21 H 0.037 0.963 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 -9.978 -9.715 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.318 6.318 3 C -0.015 4.015 4 C -0.153 4.153 5 C 0.059 3.941 6 C -0.208 4.208 7 C -0.184 4.184 8 C -0.172 4.172 9 C 0.117 3.883 10 H 0.044 0.956 11 C -0.558 4.558 12 H 0.095 0.905 13 C -0.121 4.121 14 N -0.531 5.531 15 Si 0.696 3.304 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.149 1.149 19 O -0.290 6.290 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.994 -9.992 -9.515 14.119 hybrid contribution -0.669 -0.350 0.337 0.827 sum -3.663 -10.342 -9.178 14.304 Atomic orbital electron populations 1.22676 0.81664 1.02122 0.99925 1.87818 1.19264 1.29252 1.95496 1.22687 0.94323 0.83626 1.00879 1.21844 0.93379 0.97566 1.02485 1.21820 0.93433 0.90592 0.88272 1.22112 1.01421 1.00725 0.96537 1.23134 0.95116 0.99819 1.00291 1.23117 0.99528 0.97733 0.96841 1.20939 0.80924 0.96301 0.90138 0.95605 1.21056 1.21751 0.97162 1.15805 0.90505 1.25047 0.96025 0.95795 0.95201 1.69929 1.35808 1.23857 1.23551 0.86978 0.79881 0.83697 0.79862 1.21094 1.21843 1.14873 1.88852 1.33078 1.77442 1.29612 0.94151 0.94392 0.90086 0.92190 0.93269 0.91356 0.91153 0.92844 0.92463 0.91877 0.91317 0.91495 0.91078 0.91621 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.40 -6.42 10.70 -35.23 -0.38 -6.80 16 3 C 0.06 1.01 5.34 37.16 0.20 1.21 16 4 C -0.11 -1.92 4.76 -26.73 -0.13 -2.04 16 5 C 0.10 1.81 0.94 -89.90 -0.08 1.72 16 6 C -0.15 -2.44 8.24 37.16 0.31 -2.13 16 7 C -0.15 -2.41 6.09 -24.79 -0.15 -2.56 16 8 C -0.13 -2.64 6.53 -24.49 -0.16 -2.80 16 9 C 0.17 4.14 2.67 -26.86 -0.07 4.07 16 10 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 11 C -0.52 -14.90 9.37 -34.44 -0.32 -15.22 16 12 H 0.08 2.34 8.00 -52.49 -0.42 1.92 16 13 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 14 N -0.89 -27.70 13.96 55.43 0.77 -26.93 16 15 Si 0.87 22.25 27.04 -169.99 -4.60 17.65 16 16 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 18 H -0.23 -5.62 5.53 56.52 0.31 -5.31 16 19 O -0.37 -8.58 7.30 -35.23 -0.26 -8.84 16 20 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 24 H 0.05 0.74 6.35 -51.93 -0.33 0.41 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.91 6.32 -51.93 -0.33 0.59 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 31 H 0.07 1.02 7.85 -51.93 -0.41 0.62 16 32 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 LS Contribution 272.40 15.07 4.11 4.11 Total: -1.00 -31.41 272.40 -5.46 -36.87 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.71 Total: -2.18 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 0.60 Total: -13.88 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.63 Total: -15.64 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.60 Total: 17.65 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.41 -5.46 -36.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308127498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.292 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds