Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00103 * 2 1 4 4 C 1.52995 * 109.47406 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47291 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.89581 * 305.93642 * 5 4 3 7 7 C 1.54373 * 109.83067 * 184.99975 * 5 4 3 8 8 C 1.55306 * 102.25261 * 219.13106 * 7 5 4 9 9 C 1.54938 * 100.94191 * 34.13530 * 8 7 5 10 10 H 1.08997 * 110.31095 * 82.57264 * 9 8 7 11 11 C 1.50702 * 110.30872 * 204.63921 * 9 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99942 * 179.71965 * 11 9 8 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 9 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 9 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 O 1.43240 * 109.82711 * 66.86742 * 5 4 3 20 20 H 1.08997 * 109.47038 * 299.99399 * 1 2 3 21 21 H 1.08999 * 109.47291 * 59.99344 * 1 2 3 22 22 H 1.09003 * 109.46913 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46506 * 59.99873 * 3 2 1 24 24 H 1.09005 * 109.47085 * 300.00510 * 3 2 1 25 25 H 1.09002 * 109.46819 * 60.00169 * 4 3 2 26 26 H 1.08996 * 109.47034 * 300.00276 * 4 3 2 27 27 H 1.08999 * 109.47167 * 299.06143 * 6 5 4 28 28 H 1.08997 * 109.47416 * 59.06264 * 6 5 4 29 29 H 1.09002 * 109.46725 * 179.06936 * 6 5 4 30 30 H 1.09003 * 110.84900 * 100.94476 * 7 5 4 31 31 H 1.09002 * 110.85356 * 337.31869 * 7 5 4 32 32 H 1.09004 * 111.12412 * 276.21198 * 8 7 5 33 33 H 1.09000 * 111.15849 * 152.07172 * 8 7 5 34 34 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 6 3.5977 3.4023 -1.1641 7 6 5.6923 2.4726 -0.1272 8 6 6.1835 3.5881 0.8353 9 6 5.0954 3.5265 1.9365 10 1 5.3216 2.7324 2.6480 11 6 4.9952 4.8516 2.6474 12 1 5.6364 5.6704 2.3564 13 6 4.0805 5.0204 3.6653 14 7 3.9893 6.1783 4.2820 15 14 2.9710 3.6042 4.1683 16 1 3.6350 2.8089 5.2321 17 1 1.6850 4.1412 4.6814 18 1 2.7108 2.7370 2.9912 19 8 3.8722 3.2408 1.2397 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6885 1.8463 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.8566 0.6440 -0.8909 26 1 3.8574 0.6436 0.8891 27 1 3.8469 2.9133 -2.1059 28 1 2.5144 3.4761 -1.0686 29 1 4.0330 4.4015 -1.1473 30 1 6.0122 2.6738 -1.1496 31 1 6.0400 1.4939 0.2037 32 1 6.1878 4.5596 0.3410 33 1 7.1672 3.3523 1.2413 34 1 3.3461 6.2969 4.9983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308127498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = -123.557086 kcal Electronic energy + Delta-G solvation = -15253.670329 eV Core-core repulsion = 12764.562242 eV Total energy + Delta-G solvation = -2489.108087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66548 -38.71286 -35.30466 -33.98130 -32.73199 -30.29759 -28.60660 -27.24636 -25.57586 -23.53932 -21.99707 -20.55335 -18.95623 -17.69015 -17.16977 -16.72603 -16.66264 -16.01973 -15.66815 -14.82795 -14.68223 -14.51519 -13.99872 -13.59905 -13.49555 -13.13293 -12.87098 -12.71199 -12.49442 -12.20893 -12.10995 -12.03322 -11.66973 -11.43014 -11.29127 -11.19040 -10.76271 -10.57443 -9.97752 -8.35718 -6.46922 1.34175 1.36250 1.65278 2.40353 2.80097 2.89560 3.44136 3.83032 4.00907 4.15983 4.18299 4.24141 4.41792 4.46672 4.53485 4.54307 4.60720 4.69699 4.79954 4.82737 4.97139 5.00179 5.02562 5.10079 5.22739 5.24295 5.48610 5.54257 5.58988 6.20645 6.21410 6.53804 6.80325 7.29946 8.78790 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.011932 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.856446 B = 2346.122240 C = 3098.070377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.064 3.936 4 C -0.110 4.110 5 C 0.085 3.915 6 C -0.148 4.148 7 C -0.132 4.132 8 C -0.133 4.133 9 C 0.170 3.830 10 H 0.024 0.976 11 C -0.528 4.528 12 H 0.040 0.960 13 C 0.027 3.973 14 N -0.941 5.941 15 Si 0.933 3.067 16 H -0.277 1.277 17 H -0.293 1.293 18 H -0.216 1.216 19 O -0.395 6.395 20 H 0.036 0.964 21 H 0.053 0.947 22 H 0.104 0.896 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -12.417 -11.608 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.012 4.012 4 C -0.148 4.148 5 C 0.045 3.955 6 C -0.205 4.205 7 C -0.170 4.170 8 C -0.171 4.171 9 C 0.114 3.886 10 H 0.041 0.959 11 C -0.565 4.565 12 H 0.058 0.942 13 C -0.172 4.172 14 N -0.581 5.581 15 Si 0.757 3.243 16 H -0.203 1.203 17 H -0.219 1.219 18 H -0.139 1.139 19 O -0.316 6.316 20 H 0.054 0.946 21 H 0.072 0.928 22 H 0.122 0.878 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.308 -12.444 -11.426 17.215 hybrid contribution -0.561 0.432 0.853 1.109 sum -3.869 -12.011 -10.574 16.463 Atomic orbital electron populations 1.22927 0.79823 1.03917 1.00503 1.87785 1.21324 1.28749 1.95569 1.22591 0.94510 0.83946 1.00199 1.21793 0.93313 0.96391 1.03275 1.22216 0.95143 0.91445 0.86686 1.22105 1.01069 0.99953 0.97381 1.23127 0.93392 0.99250 1.01188 1.23042 0.98983 0.98740 0.96301 1.20763 0.82935 0.93468 0.91442 0.95852 1.21387 1.20569 0.98342 1.16218 0.94157 1.25901 0.97702 0.98135 0.95472 1.70057 1.37285 1.26025 1.24763 0.85989 0.77796 0.80727 0.79776 1.20251 1.21931 1.13883 1.88733 1.32515 1.78398 1.31962 0.94564 0.92830 0.87774 0.95226 0.91635 0.88359 0.92466 0.89135 0.92739 0.93476 0.88140 0.89684 0.92295 0.90140 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.23 10.70 -148.98 -1.59 -13.83 16 3 C 0.06 1.96 5.34 71.98 0.38 2.35 16 4 C -0.11 -3.31 4.76 30.59 0.15 -3.16 16 5 C 0.08 2.85 0.94 -10.33 -0.01 2.84 16 6 C -0.15 -4.34 8.24 71.98 0.59 -3.75 16 7 C -0.13 -3.88 6.09 31.85 0.19 -3.69 16 8 C -0.13 -5.04 6.53 32.05 0.21 -4.83 16 9 C 0.17 8.10 2.67 30.51 0.08 8.18 16 10 H 0.02 1.14 7.50 -2.39 -0.02 1.12 16 11 C -0.53 -31.05 9.37 25.60 0.24 -30.81 16 12 H 0.04 2.58 8.00 -2.91 -0.02 2.56 16 13 C 0.03 1.63 5.47 84.66 0.46 2.10 16 14 N -0.94 -60.31 13.96 21.45 0.30 -60.01 16 15 Si 0.93 46.87 27.04 68.60 1.85 48.73 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 17 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 18 H -0.22 -10.46 5.53 99.48 0.55 -9.91 16 19 O -0.39 -17.97 7.30 -148.98 -1.09 -19.06 16 20 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.03 1.08 7.90 -2.39 -0.02 1.06 16 24 H 0.07 1.78 6.35 -2.38 -0.02 1.76 16 25 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.61 6.32 -2.39 -0.02 1.59 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 2.35 7.82 -2.39 -0.02 2.33 16 31 H 0.08 2.22 7.85 -2.39 -0.02 2.20 16 32 H 0.06 2.35 8.04 -2.38 -0.02 2.33 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -69.44 272.40 3.91 -65.52 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.89 Total: 7.63 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.55 Total: -28.99 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.30 Total: -60.01 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -2.68 Total: -32.88 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.85 Total: 48.73 kcal Total: -69.44 3.91 -65.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308127498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.032 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds