Wall clock time and date at job start Mon Mar 30 2020 02:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00420 * 2 1 4 4 C 1.52996 * 109.47501 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47335 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.86809 * 58.99464 * 5 4 3 7 7 C 1.54099 * 109.87742 * 179.97438 * 5 4 3 8 8 C 1.54810 * 104.18916 * 121.45438 * 7 5 4 9 9 C 1.55004 * 102.08968 * 20.87952 * 8 7 5 10 10 H 1.09003 * 110.61776 * 81.63816 * 9 8 7 11 11 C 1.50696 * 110.61469 * 204.47208 * 9 8 7 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99717 * 179.97438 * 11 9 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 O 1.43746 * 109.87985 * 297.83041 * 5 4 3 20 20 H 1.08993 * 109.47308 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47331 * 300.00725 * 1 2 3 22 22 H 1.09004 * 109.46601 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.47232 * 59.99202 * 3 2 1 24 24 H 1.09003 * 109.46832 * 299.99678 * 3 2 1 25 25 H 1.09002 * 109.47344 * 59.99497 * 4 3 2 26 26 H 1.09003 * 109.46999 * 299.99802 * 4 3 2 27 27 H 1.09005 * 109.47385 * 181.00741 * 6 5 4 28 28 H 1.09001 * 109.47097 * 301.00392 * 6 5 4 29 29 H 1.08997 * 109.47408 * 61.00633 * 6 5 4 30 30 H 1.08995 * 110.49013 * 2.77648 * 7 5 4 31 31 H 1.09007 * 110.48745 * 240.13041 * 7 5 4 32 32 H 1.08993 * 110.90812 * 262.68302 * 8 7 5 33 33 H 1.08998 * 110.90630 * 139.07204 * 8 7 5 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1579 2.5822 0.0000 6 6 3.6918 3.3595 1.2326 7 6 5.6949 2.4714 0.0013 8 6 6.1307 3.2242 -1.2793 9 6 4.8989 4.1211 -1.5637 10 1 4.9279 5.0197 -0.9474 11 6 4.8327 4.4838 -3.0249 12 1 5.5874 4.1199 -3.7064 13 6 3.8080 5.2794 -3.4920 14 7 3.7499 5.5955 -4.7672 15 14 2.5023 5.9082 -2.3133 16 1 1.3834 4.9340 -2.2486 17 1 3.0940 6.0730 -0.9613 18 1 1.9917 7.2175 -2.7932 19 8 3.7806 3.2847 -1.1960 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.6886 1.8464 0.8899 24 1 1.6888 1.8463 -0.8901 25 1 3.8576 0.6434 -0.8891 26 1 3.8568 0.6438 0.8909 27 1 4.1245 4.3599 1.2165 28 1 2.6044 3.4339 1.2255 29 1 4.0145 2.8386 2.1341 30 1 6.0021 1.4267 -0.0471 31 1 6.1113 2.9519 0.8867 32 1 6.3028 2.5281 -2.1002 33 1 7.0176 3.8295 -1.0918 34 1 3.0288 6.1549 -5.0958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308127499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:19 Heat of formation + Delta-G solvation = -103.783814 kcal Electronic energy + Delta-G solvation = -15228.655865 eV Core-core repulsion = 12740.405211 eV Total energy + Delta-G solvation = -2488.250654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.16069 -37.48620 -33.52906 -32.07962 -31.12957 -28.84355 -27.13717 -26.16354 -23.98543 -21.99886 -20.19751 -19.20163 -16.94195 -16.25339 -15.80929 -15.39478 -14.82582 -14.44021 -14.36679 -13.44293 -13.17261 -12.92158 -12.52325 -12.24252 -11.94359 -11.68282 -11.47245 -11.06957 -10.94383 -10.83242 -10.67199 -10.38353 -10.05831 -9.76598 -9.64367 -9.43840 -9.35814 -8.64175 -8.41071 -6.12175 -4.20240 3.38641 3.42925 3.51441 3.94451 4.45831 4.68772 5.17049 5.26928 5.31906 5.38541 5.42607 5.48962 5.58887 5.67736 5.71338 5.76516 5.86079 5.94625 5.95625 6.14894 6.31146 6.36427 6.44372 6.48023 6.57330 6.73893 6.78917 7.17725 7.35638 7.61407 8.21900 8.44371 8.89792 9.50716 10.98534 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.011270 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.889764 B = 2483.929797 C = 3029.416252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.398 6.398 3 C 0.061 3.939 4 C -0.102 4.102 5 C 0.096 3.904 6 C -0.165 4.165 7 C -0.144 4.144 8 C -0.135 4.135 9 C 0.168 3.832 10 H 0.030 0.970 11 C -0.514 4.514 12 H 0.080 0.920 13 C 0.082 3.918 14 N -0.892 5.892 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.266 1.266 18 H -0.297 1.297 19 O -0.371 6.371 20 H 0.081 0.919 21 H 0.036 0.964 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -6.890 11.875 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.317 6.317 3 C -0.015 4.015 4 C -0.139 4.139 5 C 0.056 3.944 6 C -0.222 4.222 7 C -0.182 4.182 8 C -0.173 4.173 9 C 0.113 3.887 10 H 0.048 0.952 11 C -0.551 4.551 12 H 0.098 0.902 13 C -0.122 4.122 14 N -0.530 5.530 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.191 1.191 18 H -0.225 1.225 19 O -0.292 6.292 20 H 0.100 0.900 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.551 -6.974 11.630 13.798 hybrid contribution -0.819 0.616 0.615 1.194 sum -3.370 -6.358 12.244 14.202 Atomic orbital electron populations 1.22679 0.81632 1.02139 0.99932 1.87814 1.19284 1.29104 1.95495 1.22647 0.94312 0.83708 1.00862 1.21602 0.93170 0.96350 1.02820 1.21845 0.93404 0.91194 0.87998 1.22345 1.01659 1.00810 0.97419 1.22965 0.95087 1.00929 0.99239 1.23002 0.99505 0.98941 0.95872 1.21247 0.81894 0.89069 0.96535 0.95194 1.20951 1.12296 1.30515 0.91300 0.90186 1.25073 0.97247 0.94790 0.95125 1.69925 1.32614 1.36640 1.13785 0.86468 0.82255 0.77137 0.81493 1.20046 1.19081 1.22462 1.89119 1.41600 1.59004 1.39455 0.90047 0.94496 0.94047 0.93564 0.91997 0.90537 0.91172 0.92340 0.92472 0.92469 0.91479 0.91654 0.91143 0.91839 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.40 -6.44 10.70 -35.23 -0.38 -6.82 16 3 C 0.06 1.02 5.45 37.16 0.20 1.22 16 4 C -0.10 -1.70 4.65 -26.73 -0.12 -1.82 16 5 C 0.10 1.76 0.85 -90.05 -0.08 1.68 16 6 C -0.16 -2.66 8.26 37.16 0.31 -2.36 16 7 C -0.14 -2.41 6.27 -25.20 -0.16 -2.57 16 8 C -0.14 -2.71 6.55 -24.72 -0.16 -2.87 16 9 C 0.17 4.06 2.47 -26.83 -0.07 3.99 16 10 H 0.03 0.74 7.04 -51.93 -0.37 0.38 16 11 C -0.51 -14.76 9.39 -34.44 -0.32 -15.09 16 12 H 0.08 2.45 8.01 -52.49 -0.42 2.03 16 13 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 14 N -0.89 -27.53 13.96 55.43 0.77 -26.75 16 15 Si 0.90 23.02 26.57 -169.99 -4.52 18.50 16 16 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.55 6.46 56.52 0.37 -6.18 16 18 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 19 O -0.37 -8.73 8.33 -35.23 -0.29 -9.02 16 20 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.71 6.42 -51.93 -0.33 0.38 16 24 H 0.06 1.19 7.76 -51.93 -0.40 0.78 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.92 6.40 -51.93 -0.33 0.58 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.00 7.70 -51.93 -0.40 0.60 16 31 H 0.06 0.96 7.69 -51.93 -0.40 0.56 16 32 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.27 7.66 8.31 -40.82 -0.34 7.33 16 LS Contribution 273.12 15.07 4.12 4.12 Total: -1.00 -31.26 273.12 -5.31 -36.57 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.62 Total: -2.64 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 0.61 Total: -13.96 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.67 Total: -15.84 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.52 Total: 18.50 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.26 -5.31 -36.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308127499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.213 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds