Wall clock time and date at job start Mon Mar 30 2020 02:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00420 * 2 1 4 4 C 1.52996 * 109.47501 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47335 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.86809 * 58.99464 * 5 4 3 7 7 C 1.54099 * 109.87742 * 179.97438 * 5 4 3 8 8 C 1.54810 * 104.18916 * 121.45438 * 7 5 4 9 9 C 1.55004 * 102.08968 * 20.87952 * 8 7 5 10 10 H 1.09003 * 110.61776 * 81.63816 * 9 8 7 11 11 C 1.50696 * 110.61469 * 204.47208 * 9 8 7 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99717 * 179.97438 * 11 9 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 O 1.43746 * 109.87985 * 297.83041 * 5 4 3 20 20 H 1.08993 * 109.47308 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47331 * 300.00725 * 1 2 3 22 22 H 1.09004 * 109.46601 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.47232 * 59.99202 * 3 2 1 24 24 H 1.09003 * 109.46832 * 299.99678 * 3 2 1 25 25 H 1.09002 * 109.47344 * 59.99497 * 4 3 2 26 26 H 1.09003 * 109.46999 * 299.99802 * 4 3 2 27 27 H 1.09005 * 109.47385 * 181.00741 * 6 5 4 28 28 H 1.09001 * 109.47097 * 301.00392 * 6 5 4 29 29 H 1.08997 * 109.47408 * 61.00633 * 6 5 4 30 30 H 1.08995 * 110.49013 * 2.77648 * 7 5 4 31 31 H 1.09007 * 110.48745 * 240.13041 * 7 5 4 32 32 H 1.08993 * 110.90812 * 262.68302 * 8 7 5 33 33 H 1.08998 * 110.90630 * 139.07204 * 8 7 5 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1579 2.5822 0.0000 6 6 3.6918 3.3595 1.2326 7 6 5.6949 2.4714 0.0013 8 6 6.1307 3.2242 -1.2793 9 6 4.8989 4.1211 -1.5637 10 1 4.9279 5.0197 -0.9474 11 6 4.8327 4.4838 -3.0249 12 1 5.5874 4.1199 -3.7064 13 6 3.8080 5.2794 -3.4920 14 7 3.7499 5.5955 -4.7672 15 14 2.5023 5.9082 -2.3133 16 1 1.3834 4.9340 -2.2486 17 1 3.0940 6.0730 -0.9613 18 1 1.9917 7.2175 -2.7932 19 8 3.7806 3.2847 -1.1960 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.6886 1.8464 0.8899 24 1 1.6888 1.8463 -0.8901 25 1 3.8576 0.6434 -0.8891 26 1 3.8568 0.6438 0.8909 27 1 4.1245 4.3599 1.2165 28 1 2.6044 3.4339 1.2255 29 1 4.0145 2.8386 2.1341 30 1 6.0021 1.4267 -0.0471 31 1 6.1113 2.9519 0.8867 32 1 6.3028 2.5281 -2.1002 33 1 7.0176 3.8295 -1.0918 34 1 3.0288 6.1549 -5.0958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308127499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:19 Heat of formation + Delta-G solvation = -125.339785 kcal Electronic energy + Delta-G solvation = -15229.590602 eV Core-core repulsion = 12740.405211 eV Total energy + Delta-G solvation = -2489.185391 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69978 -38.72899 -35.30595 -33.99754 -32.72816 -30.26252 -28.82486 -27.26171 -25.57825 -23.50753 -21.94514 -20.63906 -19.08351 -17.53360 -17.11152 -16.89859 -16.59921 -15.89055 -15.73173 -15.02865 -14.78841 -14.55610 -14.18906 -13.64185 -13.51226 -12.99757 -12.81747 -12.75454 -12.42655 -12.27007 -12.13809 -12.05725 -11.75866 -11.39452 -11.30787 -11.25431 -10.87049 -10.59704 -10.18002 -8.38274 -6.50436 1.31356 1.38231 1.47247 2.33225 2.78909 2.83356 3.46110 3.84556 3.98049 4.10221 4.18128 4.24238 4.38859 4.43411 4.50449 4.52952 4.58653 4.65167 4.77387 4.79202 4.92487 5.00492 5.03655 5.09054 5.19038 5.22693 5.45468 5.48909 5.54542 6.19195 6.19502 6.45760 6.69363 7.24536 8.76420 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.011270 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.889764 B = 2483.929797 C = 3029.416252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.064 3.936 4 C -0.098 4.098 5 C 0.082 3.918 6 C -0.162 4.162 7 C -0.133 4.133 8 C -0.135 4.135 9 C 0.167 3.833 10 H 0.031 0.969 11 C -0.525 4.525 12 H 0.042 0.958 13 C 0.026 3.974 14 N -0.939 5.939 15 Si 0.960 3.040 16 H -0.279 1.279 17 H -0.247 1.247 18 H -0.290 1.290 19 O -0.399 6.399 20 H 0.105 0.895 21 H 0.054 0.946 22 H 0.034 0.966 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 -7.627 15.101 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C -0.012 4.012 4 C -0.136 4.136 5 C 0.043 3.957 6 C -0.220 4.220 7 C -0.170 4.170 8 C -0.173 4.173 9 C 0.111 3.889 10 H 0.049 0.951 11 C -0.563 4.563 12 H 0.060 0.940 13 C -0.174 4.174 14 N -0.579 5.579 15 Si 0.785 3.215 16 H -0.205 1.205 17 H -0.171 1.171 18 H -0.216 1.216 19 O -0.321 6.321 20 H 0.123 0.877 21 H 0.072 0.928 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.893 -7.722 14.872 17.005 hybrid contribution -0.692 0.745 -0.418 1.099 sum -3.585 -6.977 14.454 16.445 Atomic orbital electron populations 1.22929 0.79815 1.03960 1.00452 1.87784 1.21329 1.28629 1.95557 1.22546 0.94587 0.84003 1.00056 1.21593 0.93041 0.95465 1.03467 1.22251 0.94782 0.91782 0.86932 1.22333 1.01558 1.00477 0.97585 1.22961 0.93749 1.02042 0.98260 1.22936 0.98464 0.98525 0.97353 1.21047 0.84204 0.90243 0.93398 0.95129 1.21274 1.11178 1.30189 0.93617 0.93975 1.25936 0.99566 0.95257 0.96619 1.70051 1.33910 1.38179 1.15741 0.85497 0.79271 0.76526 0.80201 1.20460 1.17091 1.21642 1.89016 1.41320 1.59410 1.42319 0.87677 0.92784 0.94706 0.91722 0.95436 0.92369 0.87925 0.93097 0.92682 0.88755 0.89376 0.88678 0.92894 0.90185 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -12.56 10.70 -148.98 -1.59 -14.16 16 3 C 0.06 2.04 5.45 71.98 0.39 2.43 16 4 C -0.10 -3.01 4.65 30.59 0.14 -2.87 16 5 C 0.08 2.77 0.85 -10.42 -0.01 2.76 16 6 C -0.16 -4.57 8.26 71.98 0.59 -3.97 16 7 C -0.13 -3.95 6.27 31.58 0.20 -3.76 16 8 C -0.13 -5.23 6.55 31.90 0.21 -5.02 16 9 C 0.17 8.00 2.47 30.53 0.08 8.08 16 10 H 0.03 1.48 7.04 -2.39 -0.02 1.46 16 11 C -0.53 -31.14 9.39 25.60 0.24 -30.90 16 12 H 0.04 2.72 8.01 -2.91 -0.02 2.70 16 13 C 0.03 1.56 5.47 84.66 0.46 2.02 16 14 N -0.94 -59.98 13.96 21.45 0.30 -59.68 16 15 Si 0.96 47.94 26.57 68.60 1.82 49.76 16 16 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 17 H -0.25 -11.46 6.46 99.48 0.64 -10.81 16 18 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 19 O -0.40 -18.43 8.33 -148.98 -1.24 -19.67 16 20 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.06 1.79 6.42 -2.39 -0.02 1.78 16 24 H 0.03 1.05 7.76 -2.39 -0.02 1.03 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.05 1.56 6.40 -2.39 -0.02 1.55 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.27 7.70 -2.39 -0.02 2.26 16 31 H 0.09 2.31 7.69 -2.38 -0.02 2.29 16 32 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 33 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -69.58 273.12 3.83 -65.75 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.99 Total: 7.42 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 3.55 Total: -29.42 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.30 Total: -59.68 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -2.84 Total: -33.83 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.82 Total: 49.76 kcal Total: -69.58 3.83 -65.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308127499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.591 kcal (2) G-P(sol) polarization free energy of solvation -69.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds