Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00207 * 2 1 4 4 C 1.52998 * 109.47156 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46914 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.98939 * 306.08054 * 5 4 3 7 7 C 1.54103 * 109.87622 * 184.99903 * 5 4 3 8 8 C 1.54814 * 104.30174 * 238.61315 * 7 5 4 9 9 C 1.54996 * 102.09215 * 339.05146 * 8 7 5 10 10 H 1.08995 * 110.62204 * 278.52212 * 9 8 7 11 11 C 1.50705 * 110.61368 * 155.52563 * 9 8 7 12 12 H 1.07996 * 120.00283 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99680 * 179.97438 * 11 9 8 14 14 N 1.31509 * 119.99684 * 179.97438 * 13 11 9 15 15 Si 1.86794 * 120.00039 * 0.02562 * 13 11 9 16 16 H 1.48497 * 109.47291 * 89.99987 * 15 13 11 17 17 H 1.48502 * 109.47253 * 209.99725 * 15 13 11 18 18 H 1.48503 * 109.47195 * 329.99662 * 15 13 11 19 19 O 1.44038 * 109.99310 * 67.28463 * 5 4 3 20 20 H 1.09002 * 109.46782 * 60.00435 * 1 2 3 21 21 H 1.08996 * 109.46945 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.46935 * 300.00414 * 1 2 3 23 23 H 1.08995 * 109.46919 * 59.99781 * 3 2 1 24 24 H 1.09009 * 109.46902 * 300.00051 * 3 2 1 25 25 H 1.08995 * 109.47437 * 60.00035 * 4 3 2 26 26 H 1.08996 * 109.47136 * 300.00064 * 4 3 2 27 27 H 1.08996 * 109.47209 * 298.92035 * 6 5 4 28 28 H 1.08997 * 109.46772 * 58.92219 * 6 5 4 29 29 H 1.09006 * 109.46882 * 178.91407 * 6 5 4 30 30 H 1.09002 * 110.48828 * 119.86956 * 7 5 4 31 31 H 1.09002 * 110.48868 * 357.35211 * 7 5 4 32 32 H 1.08997 * 110.90796 * 97.25550 * 8 7 5 33 33 H 1.09003 * 110.90001 * 220.82229 * 8 7 5 34 34 H 0.97004 * 120.00210 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 3.5965 3.4043 -1.1633 7 6 5.6898 2.4738 -0.1282 8 6 6.2296 3.1806 1.1389 9 6 5.0278 4.0676 1.5528 10 1 5.0086 4.9861 0.9662 11 6 5.0804 4.3784 3.0265 12 1 5.8860 3.9902 3.6319 13 6 4.0998 5.1585 3.6019 14 7 4.1454 5.4293 4.8880 15 14 2.7059 5.8294 2.5550 16 1 1.5816 4.8594 2.5471 17 1 2.2407 7.1218 3.1194 18 1 3.1873 6.0406 1.1661 19 8 3.8812 3.2452 1.2472 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6887 1.8463 0.8899 24 1 1.6886 1.8464 -0.8901 25 1 3.8568 0.6438 -0.8908 26 1 3.8575 0.6435 0.8891 27 1 3.8456 2.9177 -2.1062 28 1 2.5132 3.4768 -1.0670 29 1 4.0307 4.4039 -1.1443 30 1 6.0353 2.9850 -1.0268 31 1 5.9983 1.4284 -0.1426 32 1 6.4648 2.4558 1.9183 33 1 7.1010 3.7911 0.9022 34 1 3.4558 5.9784 5.2928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308127500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = -103.333733 kcal Electronic energy + Delta-G solvation = -15212.455288 eV Core-core repulsion = 12724.224152 eV Total energy + Delta-G solvation = -2488.231137 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.14231 -37.50242 -33.54826 -32.08959 -31.11015 -28.82324 -27.14619 -26.17367 -24.02423 -21.99657 -20.19444 -19.18345 -16.94148 -16.28508 -15.82839 -15.38501 -14.81966 -14.47853 -14.34974 -13.44097 -13.15451 -12.93144 -12.52208 -12.27119 -11.94339 -11.68784 -11.45064 -11.08157 -10.96429 -10.83050 -10.67457 -10.37644 -10.05741 -9.76589 -9.64311 -9.44770 -9.36426 -8.63964 -8.40879 -6.11942 -4.20050 3.38857 3.43271 3.51729 3.92905 4.46083 4.68117 5.16433 5.26799 5.31162 5.36860 5.41265 5.47293 5.58373 5.66374 5.70181 5.75234 5.84621 5.93755 5.95441 6.14291 6.31307 6.35760 6.44592 6.47841 6.56214 6.73747 6.78864 7.17810 7.33874 7.61581 8.21789 8.44575 8.89986 9.50970 10.98774 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026487 B = 0.011040 C = 0.009116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.885523 B = 2535.565156 C = 3070.681441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.397 6.397 3 C 0.060 3.940 4 C -0.102 4.102 5 C 0.096 3.904 6 C -0.165 4.165 7 C -0.144 4.144 8 C -0.135 4.135 9 C 0.168 3.832 10 H 0.030 0.970 11 C -0.514 4.514 12 H 0.080 0.920 13 C 0.082 3.918 14 N -0.892 5.892 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.297 1.297 18 H -0.266 1.266 19 O -0.372 6.372 20 H 0.037 0.963 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 -6.482 -12.153 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.317 6.317 3 C -0.016 4.016 4 C -0.140 4.140 5 C 0.055 3.945 6 C -0.223 4.223 7 C -0.182 4.182 8 C -0.173 4.173 9 C 0.113 3.887 10 H 0.048 0.952 11 C -0.551 4.551 12 H 0.098 0.902 13 C -0.122 4.122 14 N -0.530 5.530 15 Si 0.727 3.273 16 H -0.200 1.200 17 H -0.225 1.225 18 H -0.191 1.191 19 O -0.293 6.293 20 H 0.055 0.945 21 H 0.100 0.900 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.517 -6.576 -11.884 14.030 hybrid contribution -0.862 0.637 -0.551 1.205 sum -4.379 -5.939 -12.434 14.459 Atomic orbital electron populations 1.22681 0.81632 1.02173 0.99907 1.87821 1.19279 1.29068 1.95483 1.22685 0.94393 0.83755 1.00760 1.21597 0.93051 0.96391 1.02932 1.21898 0.93721 0.91390 0.87448 1.22350 1.01500 1.00684 0.97719 1.22962 0.94985 1.01012 0.99257 1.23003 0.99342 0.99247 0.95723 1.21240 0.81328 0.89267 0.96879 0.95226 1.20948 1.11514 1.31317 0.91272 0.90181 1.25069 0.97422 0.94850 0.94883 1.69922 1.34530 1.37651 1.10865 0.86466 0.82766 0.77321 0.80792 1.20039 1.22463 1.19088 1.89159 1.43286 1.61464 1.35367 0.94479 0.90027 0.94073 0.92171 0.93456 0.91131 0.90405 0.92461 0.92421 0.92323 0.91670 0.91497 0.91145 0.91846 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.40 -6.38 10.70 -35.23 -0.38 -6.75 16 3 C 0.06 1.00 5.35 37.16 0.20 1.19 16 4 C -0.10 -1.70 4.69 -26.73 -0.13 -1.83 16 5 C 0.10 1.76 0.87 -90.04 -0.08 1.68 16 6 C -0.17 -2.66 8.13 37.16 0.30 -2.36 16 7 C -0.14 -2.42 6.27 -25.20 -0.16 -2.57 16 8 C -0.14 -2.71 6.55 -24.72 -0.16 -2.87 16 9 C 0.17 4.08 2.47 -26.83 -0.07 4.01 16 10 H 0.03 0.74 7.03 -51.93 -0.37 0.37 16 11 C -0.51 -14.78 9.39 -34.44 -0.32 -15.10 16 12 H 0.08 2.45 8.01 -52.49 -0.42 2.03 16 13 C 0.08 2.42 5.47 -17.82 -0.10 2.33 16 14 N -0.89 -27.56 13.96 55.43 0.77 -26.78 16 15 Si 0.90 23.05 26.58 -169.99 -4.52 18.53 16 16 H -0.27 -7.10 7.11 56.52 0.40 -6.69 16 17 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.27 -6.56 6.46 56.52 0.37 -6.19 16 19 O -0.37 -8.78 8.56 -35.23 -0.30 -9.08 16 20 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 24 H 0.05 0.71 6.35 -51.92 -0.33 0.38 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.92 6.32 -51.93 -0.33 0.59 16 29 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 30 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 31 H 0.07 1.00 7.70 -51.93 -0.40 0.60 16 32 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 273.17 15.07 4.12 4.12 Total: -1.00 -31.35 273.17 -5.33 -36.68 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.62 Total: -2.70 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 0.60 Total: -14.01 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.77 Total: -26.78 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.68 Total: -15.83 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.52 Total: 18.53 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.35 -5.33 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308127500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.658 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds