Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00207 * 2 1 4 4 C 1.52998 * 109.47156 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46914 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.98939 * 306.08054 * 5 4 3 7 7 C 1.54103 * 109.87622 * 184.99903 * 5 4 3 8 8 C 1.54814 * 104.30174 * 238.61315 * 7 5 4 9 9 C 1.54996 * 102.09215 * 339.05146 * 8 7 5 10 10 H 1.08995 * 110.62204 * 278.52212 * 9 8 7 11 11 C 1.50705 * 110.61368 * 155.52563 * 9 8 7 12 12 H 1.07996 * 120.00283 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99680 * 179.97438 * 11 9 8 14 14 N 1.31509 * 119.99684 * 179.97438 * 13 11 9 15 15 Si 1.86794 * 120.00039 * 0.02562 * 13 11 9 16 16 H 1.48497 * 109.47291 * 89.99987 * 15 13 11 17 17 H 1.48502 * 109.47253 * 209.99725 * 15 13 11 18 18 H 1.48503 * 109.47195 * 329.99662 * 15 13 11 19 19 O 1.44038 * 109.99310 * 67.28463 * 5 4 3 20 20 H 1.09002 * 109.46782 * 60.00435 * 1 2 3 21 21 H 1.08996 * 109.46945 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.46935 * 300.00414 * 1 2 3 23 23 H 1.08995 * 109.46919 * 59.99781 * 3 2 1 24 24 H 1.09009 * 109.46902 * 300.00051 * 3 2 1 25 25 H 1.08995 * 109.47437 * 60.00035 * 4 3 2 26 26 H 1.08996 * 109.47136 * 300.00064 * 4 3 2 27 27 H 1.08996 * 109.47209 * 298.92035 * 6 5 4 28 28 H 1.08997 * 109.46772 * 58.92219 * 6 5 4 29 29 H 1.09006 * 109.46882 * 178.91407 * 6 5 4 30 30 H 1.09002 * 110.48828 * 119.86956 * 7 5 4 31 31 H 1.09002 * 110.48868 * 357.35211 * 7 5 4 32 32 H 1.08997 * 110.90796 * 97.25550 * 8 7 5 33 33 H 1.09003 * 110.90001 * 220.82229 * 8 7 5 34 34 H 0.97004 * 120.00210 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 3.5965 3.4043 -1.1633 7 6 5.6898 2.4738 -0.1282 8 6 6.2296 3.1806 1.1389 9 6 5.0278 4.0676 1.5528 10 1 5.0086 4.9861 0.9662 11 6 5.0804 4.3784 3.0265 12 1 5.8860 3.9902 3.6319 13 6 4.0998 5.1585 3.6019 14 7 4.1454 5.4293 4.8880 15 14 2.7059 5.8294 2.5550 16 1 1.5816 4.8594 2.5471 17 1 2.2407 7.1218 3.1194 18 1 3.1873 6.0406 1.1661 19 8 3.8812 3.2452 1.2472 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6887 1.8463 0.8899 24 1 1.6886 1.8464 -0.8901 25 1 3.8568 0.6438 -0.8908 26 1 3.8575 0.6435 0.8891 27 1 3.8456 2.9177 -2.1062 28 1 2.5132 3.4768 -1.0670 29 1 4.0307 4.4039 -1.1443 30 1 6.0353 2.9850 -1.0268 31 1 5.9983 1.4284 -0.1426 32 1 6.4648 2.4558 1.9183 33 1 7.1010 3.7911 0.9022 34 1 3.4558 5.9784 5.2928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308127500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = -125.013374 kcal Electronic energy + Delta-G solvation = -15213.395388 eV Core-core repulsion = 12724.224152 eV Total energy + Delta-G solvation = -2489.171236 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67878 -38.73211 -35.31533 -34.01569 -32.71082 -30.24204 -28.82286 -27.25827 -25.61388 -23.50038 -21.94681 -20.61777 -19.08438 -17.54466 -17.12581 -16.87929 -16.59991 -15.86588 -15.76394 -15.02074 -14.78618 -14.54881 -14.17360 -13.64583 -13.53376 -13.00023 -12.81285 -12.73884 -12.41133 -12.29176 -12.14011 -12.06272 -11.75736 -11.39250 -11.30144 -11.25317 -10.87108 -10.59456 -10.18300 -8.38276 -6.50500 1.31331 1.38368 1.47276 2.33296 2.79142 2.83050 3.45484 3.84128 3.98393 4.10168 4.17380 4.23916 4.38408 4.43786 4.50675 4.52786 4.58490 4.64627 4.77151 4.79613 4.92138 5.00318 5.03861 5.08343 5.18798 5.22333 5.45231 5.48733 5.54312 6.19487 6.19563 6.45417 6.69163 7.24542 8.76430 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026487 B = 0.011040 C = 0.009116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.885523 B = 2535.565156 C = 3070.681441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.064 3.936 4 C -0.099 4.099 5 C 0.082 3.918 6 C -0.163 4.163 7 C -0.133 4.133 8 C -0.135 4.135 9 C 0.167 3.833 10 H 0.031 0.969 11 C -0.525 4.525 12 H 0.042 0.958 13 C 0.026 3.974 14 N -0.939 5.939 15 Si 0.960 3.040 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.247 1.247 19 O -0.401 6.401 20 H 0.054 0.946 21 H 0.104 0.896 22 H 0.035 0.965 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -7.090 -15.393 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.013 4.013 4 C -0.136 4.136 5 C 0.043 3.957 6 C -0.220 4.220 7 C -0.170 4.170 8 C -0.173 4.173 9 C 0.111 3.889 10 H 0.049 0.951 11 C -0.563 4.563 12 H 0.060 0.940 13 C -0.174 4.174 14 N -0.579 5.579 15 Si 0.785 3.215 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.171 1.171 19 O -0.322 6.322 20 H 0.073 0.927 21 H 0.122 0.878 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.110 -7.194 -15.141 17.259 hybrid contribution -0.655 0.724 0.479 1.088 sum -4.766 -6.470 -14.662 16.719 Atomic orbital electron populations 1.22931 0.79777 1.03955 1.00497 1.87789 1.21363 1.28657 1.95561 1.22591 0.94480 0.84049 1.00132 1.21585 0.93126 0.95467 1.03441 1.22305 0.95251 0.92126 0.86055 1.22340 1.01229 1.00188 0.98222 1.22959 0.93431 1.02291 0.98349 1.22936 0.98479 0.98734 0.97128 1.21038 0.83639 0.90437 0.93749 0.95148 1.21272 1.10308 1.30882 0.93803 0.93965 1.25933 1.00075 0.95404 0.95954 1.70048 1.35925 1.39215 1.12694 0.85494 0.79303 0.76632 0.80049 1.20496 1.21615 1.17089 1.89054 1.42826 1.61820 1.38546 0.92697 0.87756 0.94657 0.95451 0.91407 0.87918 0.92483 0.88724 0.92597 0.93091 0.88683 0.89380 0.92899 0.90183 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 11.01 113.37 1.25 1.79 16 2 O -0.41 -12.44 10.70 -148.98 -1.59 -14.03 16 3 C 0.06 1.98 5.35 71.98 0.38 2.37 16 4 C -0.10 -3.03 4.69 30.60 0.14 -2.89 16 5 C 0.08 2.77 0.87 -10.42 -0.01 2.77 16 6 C -0.16 -4.57 8.13 71.98 0.59 -3.99 16 7 C -0.13 -3.96 6.27 31.59 0.20 -3.77 16 8 C -0.13 -5.23 6.55 31.90 0.21 -5.03 16 9 C 0.17 8.03 2.47 30.53 0.08 8.11 16 10 H 0.03 1.47 7.03 -2.39 -0.02 1.45 16 11 C -0.53 -31.19 9.39 25.60 0.24 -30.95 16 12 H 0.04 2.73 8.01 -2.91 -0.02 2.71 16 13 C 0.03 1.57 5.47 84.66 0.46 2.03 16 14 N -0.94 -60.03 13.96 21.45 0.30 -59.74 16 15 Si 0.96 48.01 26.58 68.60 1.82 49.83 16 16 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 17 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 18 H -0.25 -11.47 6.46 99.48 0.64 -10.82 16 19 O -0.40 -18.58 8.56 -148.98 -1.28 -19.86 16 20 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.03 1.01 7.92 -2.39 -0.02 1.00 16 24 H 0.07 1.81 6.35 -2.38 -0.02 1.80 16 25 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.58 6.32 -2.39 -0.02 1.57 16 29 H 0.05 1.51 8.13 -2.38 -0.02 1.49 16 30 H 0.09 2.31 7.70 -2.39 -0.02 2.29 16 31 H 0.09 2.27 7.70 -2.39 -0.02 2.25 16 32 H 0.05 2.19 8.04 -2.39 -0.02 2.18 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -69.80 273.17 3.78 -66.03 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.99 Total: 7.32 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.54 Total: -29.55 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.30 Total: -59.74 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -2.87 Total: -33.89 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.82 Total: 49.83 kcal Total: -69.80 3.78 -66.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308127500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.986 kcal (2) G-P(sol) polarization free energy of solvation -69.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds