Wall clock time and date at job start Mon Mar 30 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 C 1.50704 * 109.47134 * 119.99805 * 2 1 3 5 5 H 1.07995 * 120.00214 * 120.00249 * 4 2 1 6 6 C 1.37882 * 119.99849 * 300.00089 * 4 2 1 7 7 N 1.31509 * 119.99734 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99884 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47012 * 90.00077 * 8 6 4 10 10 H 1.48499 * 109.47017 * 209.99975 * 8 6 4 11 11 H 1.48497 * 109.47283 * 330.00330 * 8 6 4 12 12 N 1.46896 * 109.47258 * 239.99434 * 2 1 3 13 13 C 1.46908 * 110.99578 * 85.00383 * 12 2 1 14 14 C 1.53002 * 109.46750 * 180.02562 * 13 12 2 15 15 H 1.09002 * 110.57524 * 307.69965 * 14 13 12 16 16 C 1.54096 * 110.51784 * 184.99845 * 14 13 12 17 17 N 1.47090 * 103.90714 * 241.43975 * 16 14 13 18 18 C 1.34004 * 108.88115 * 359.92654 * 17 16 14 19 19 O 1.21510 * 123.07202 * 179.97438 * 18 17 16 20 20 O 1.33777 * 113.85705 * 359.97438 * 18 17 16 21 21 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47083 * 300.00267 * 1 2 3 23 23 H 1.09001 * 109.47126 * 60.00487 * 1 2 3 24 24 H 0.97008 * 119.99914 * 179.97438 * 7 6 4 25 25 H 1.00902 * 111.00536 * 208.94916 * 12 2 1 26 26 H 1.08995 * 109.47503 * 59.99633 * 13 12 2 27 27 H 1.09000 * 109.46853 * 299.99541 * 13 12 2 28 28 H 1.09002 * 110.56601 * 122.79281 * 16 14 13 29 29 H 1.08999 * 110.56565 * 0.08290 * 16 14 13 30 30 H 0.97000 * 125.56078 * 179.88973 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1202 4.0081 9 1 3.6296 -0.5457 4.4125 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5660 3.7121 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3468 14 6 2.5951 -0.5333 -3.5744 15 1 3.5275 -1.0492 -3.3448 16 6 2.7892 0.4311 -4.7604 17 7 1.8642 -0.0776 -5.7847 18 6 1.2307 -1.1546 -5.3005 19 8 0.4049 -1.7796 -5.9360 20 8 1.5907 -1.4790 -4.0536 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1616 3.4844 25 1 2.9173 -1.1205 -1.0287 26 1 2.7588 1.0461 -2.1182 27 1 1.0871 0.6162 -2.5525 28 1 3.8173 0.3934 -5.1204 29 1 2.5218 1.4484 -4.4744 30 1 1.7336 0.3046 -6.6666 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308165215.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:36 Heat of formation + Delta-G solvation = -73.373356 kcal Electronic energy + Delta-G solvation = -14352.925410 eV Core-core repulsion = 11762.453109 eV Total energy + Delta-G solvation = -2590.472301 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37730 -37.30243 -35.82530 -34.63858 -32.83355 -30.50518 -27.87627 -25.37165 -24.34205 -22.47243 -21.77110 -19.85842 -18.11675 -16.93897 -16.69160 -16.05396 -15.03042 -14.86646 -14.36667 -14.16860 -13.48311 -13.40858 -13.34192 -12.54852 -12.07079 -11.80931 -11.34499 -10.95007 -10.78851 -10.60402 -10.47165 -10.29886 -10.15461 -9.95363 -9.41870 -8.88203 -8.52034 -7.38200 -6.06962 -4.13719 2.77912 2.86149 3.27114 3.34514 3.38693 3.60121 4.06364 4.37714 4.60298 4.84673 5.12666 5.23998 5.32909 5.39419 5.57358 5.87508 6.10687 6.73019 6.82561 7.10100 7.18087 7.38487 7.43353 7.73362 7.83271 8.15867 8.22135 8.28652 8.57241 8.95548 9.52528 10.99411 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.062111 B = 0.006070 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.694335 B = 4612.029721 C = 4636.081821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.682 5.682 13 C 0.052 3.948 14 C 0.075 3.925 15 H 0.114 0.886 16 C 0.069 3.931 17 N -0.741 5.741 18 C 0.641 3.359 19 O -0.534 6.534 20 O -0.303 6.303 21 H 0.033 0.967 22 H 0.081 0.919 23 H 0.003 0.997 24 H 0.261 0.739 25 H 0.332 0.668 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 2.607 -11.982 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.314 5.314 13 C -0.078 4.078 14 C 0.018 3.982 15 H 0.132 0.868 16 C -0.057 4.057 17 N -0.414 5.414 18 C 0.394 3.606 19 O -0.420 6.420 20 O -0.212 6.212 21 H 0.053 0.947 22 H 0.100 0.900 23 H 0.022 0.978 24 H 0.071 0.929 25 H 0.150 0.850 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 4.920 1.876 -11.975 13.081 hybrid contribution 1.118 0.519 0.705 1.420 sum 6.039 2.395 -11.270 13.008 Atomic orbital electron populations 1.21723 0.97732 0.99627 0.99290 1.19128 0.92790 0.92198 0.85343 0.98063 1.21246 1.31634 1.12610 0.90359 0.92087 1.24924 0.94969 0.94993 0.99111 1.69896 1.36487 1.22907 1.23567 0.86498 0.78414 0.80119 0.82382 1.20759 1.21176 1.19781 1.60699 1.32211 1.32691 1.05797 1.22273 1.01167 0.93963 0.90414 1.24113 0.91367 0.88438 0.94238 0.86839 1.22863 0.95212 0.99565 0.88017 1.45983 1.44725 1.31690 1.19028 1.18756 0.80547 0.80250 0.81030 1.91040 1.34953 1.56639 1.59330 1.87529 1.56086 1.50571 1.26985 0.94747 0.90046 0.97796 0.92864 0.85034 0.93577 0.90577 0.89047 0.88815 0.72676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.19 37.16 0.34 -2.80 16 2 C 0.21 5.24 2.60 -68.87 -0.18 5.06 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -13.97 8.59 -34.44 -0.30 -14.27 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.68 -13.91 6.30 -107.95 -0.68 -14.59 16 13 C 0.05 0.82 5.03 -3.82 -0.02 0.80 16 14 C 0.07 0.94 4.06 -26.16 -0.11 0.83 16 15 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 16 C 0.07 0.59 7.70 -3.15 -0.02 0.57 16 17 N -0.74 -7.85 6.40 -64.73 -0.41 -8.26 16 18 C 0.64 10.28 9.16 53.71 0.49 10.77 16 19 O -0.53 -10.57 18.04 -19.12 -0.34 -10.91 16 20 O -0.30 -5.13 10.82 -37.85 -0.41 -5.54 16 21 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 23 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.33 6.38 8.22 -39.29 -0.32 6.05 16 26 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 27 H 0.08 1.31 7.44 -51.93 -0.39 0.92 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.68 7.73 -51.93 -0.40 0.28 16 30 H 0.43 3.39 8.96 -40.82 -0.37 3.02 16 LS Contribution 257.46 15.07 3.88 3.88 Total: -1.00 -32.65 257.46 -6.05 -38.70 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.80 Total: 2.68 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 0.11 Total: 2.55 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.47 Total: -47.29 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.75 Total: -16.45 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.65 -6.05 -38.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308165215.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.670 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds