Wall clock time and date at job start Mon Mar 30 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47200 * 2 1 4 4 C 1.50704 * 109.47134 * 119.99805 * 2 1 3 5 5 H 1.07995 * 120.00214 * 120.00249 * 4 2 1 6 6 C 1.37882 * 119.99849 * 300.00089 * 4 2 1 7 7 N 1.31509 * 119.99734 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99884 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47012 * 90.00077 * 8 6 4 10 10 H 1.48499 * 109.47017 * 209.99975 * 8 6 4 11 11 H 1.48497 * 109.47283 * 330.00330 * 8 6 4 12 12 N 1.46896 * 109.47258 * 239.99434 * 2 1 3 13 13 C 1.46908 * 110.99578 * 85.00383 * 12 2 1 14 14 C 1.53002 * 109.46750 * 180.02562 * 13 12 2 15 15 H 1.09002 * 110.57524 * 307.69965 * 14 13 12 16 16 C 1.54096 * 110.51784 * 184.99845 * 14 13 12 17 17 N 1.47090 * 103.90714 * 241.43975 * 16 14 13 18 18 C 1.34004 * 108.88115 * 359.92654 * 17 16 14 19 19 O 1.21510 * 123.07202 * 179.97438 * 18 17 16 20 20 O 1.33777 * 113.85705 * 359.97438 * 18 17 16 21 21 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47083 * 300.00267 * 1 2 3 23 23 H 1.09001 * 109.47126 * 60.00487 * 1 2 3 24 24 H 0.97008 * 119.99914 * 179.97438 * 7 6 4 25 25 H 1.00902 * 111.00536 * 208.94916 * 12 2 1 26 26 H 1.08995 * 109.47503 * 59.99633 * 13 12 2 27 27 H 1.09000 * 109.46853 * 299.99541 * 13 12 2 28 28 H 1.09002 * 110.56601 * 122.79281 * 16 14 13 29 29 H 1.08999 * 110.56565 * 0.08290 * 16 14 13 30 30 H 0.97000 * 125.56078 * 179.88973 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1202 4.0081 9 1 3.6296 -0.5457 4.4125 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5660 3.7121 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3468 14 6 2.5951 -0.5333 -3.5744 15 1 3.5275 -1.0492 -3.3448 16 6 2.7892 0.4311 -4.7604 17 7 1.8642 -0.0776 -5.7847 18 6 1.2307 -1.1546 -5.3005 19 8 0.4049 -1.7796 -5.9360 20 8 1.5907 -1.4790 -4.0536 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1616 3.4844 25 1 2.9173 -1.1205 -1.0287 26 1 2.7588 1.0461 -2.1182 27 1 1.0871 0.6162 -2.5525 28 1 3.8173 0.3934 -5.1204 29 1 2.5218 1.4484 -4.4744 30 1 1.7336 0.3046 -6.6666 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308165215.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:35 Heat of formation + Delta-G solvation = -100.727475 kcal Electronic energy + Delta-G solvation = -14354.111573 eV Core-core repulsion = 11762.453109 eV Total energy + Delta-G solvation = -2591.658464 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.47521 -38.62528 -37.50728 -35.64438 -34.66480 -32.04409 -29.41101 -27.35514 -25.62312 -23.61396 -22.89936 -21.74649 -19.23867 -18.56334 -17.87670 -17.43081 -16.83655 -16.14463 -15.78534 -15.46977 -14.95897 -14.80065 -14.42116 -14.09344 -13.52545 -13.22176 -13.08997 -12.78511 -12.60832 -12.27444 -12.18947 -11.99903 -11.82270 -11.51309 -10.89773 -10.56548 -10.29848 -9.03066 -8.13027 -6.26715 1.43171 1.45790 1.55730 1.65132 1.82413 2.42573 2.65529 3.12064 3.17226 3.62122 3.87932 3.99885 4.36447 4.50025 4.63396 4.71922 4.81425 4.93838 5.06424 5.21112 5.44522 5.67215 5.84209 5.85863 6.21726 6.31908 6.45992 6.78277 7.01812 7.09307 7.43893 8.92733 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.062111 B = 0.006070 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.694335 B = 4612.029721 C = 4636.081821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.218 3.782 3 H -0.018 1.018 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.693 5.693 13 C 0.051 3.949 14 C 0.073 3.927 15 H 0.138 0.862 16 C 0.078 3.922 17 N -0.717 5.717 18 C 0.634 3.366 19 O -0.585 6.585 20 O -0.337 6.337 21 H 0.020 0.980 22 H 0.058 0.942 23 H 0.018 0.982 24 H 0.262 0.738 25 H 0.339 0.661 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 3.084 -12.589 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H -0.001 1.001 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.325 5.325 13 C -0.078 4.078 14 C 0.017 3.983 15 H 0.155 0.845 16 C -0.047 4.047 17 N -0.391 5.391 18 C 0.387 3.613 19 O -0.475 6.475 20 O -0.246 6.246 21 H 0.039 0.961 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.157 0.843 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 6.795 2.389 -12.607 14.519 hybrid contribution 0.570 0.421 0.879 1.130 sum 7.366 2.810 -11.727 14.131 Atomic orbital electron populations 1.21577 0.98503 0.98481 0.98856 1.18888 0.92190 0.91235 0.86752 1.00087 1.21602 1.31685 1.12741 0.91558 0.92078 1.25725 0.95149 0.95676 1.02066 1.70016 1.37425 1.24128 1.24195 0.85489 0.78069 0.78992 0.78662 1.19714 1.21186 1.19484 1.60529 1.32863 1.33654 1.05408 1.22342 1.01099 0.94324 0.90068 1.24316 0.90842 0.88843 0.94273 0.84472 1.23107 0.96976 0.99017 0.85555 1.45884 1.43635 1.29703 1.19859 1.18945 0.80504 0.81071 0.80745 1.90989 1.37375 1.58643 1.60508 1.87483 1.57331 1.52161 1.27648 0.96060 0.92323 0.96330 0.92841 0.84281 0.91245 0.92338 0.84537 0.86737 0.70923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 9.19 71.98 0.66 -5.23 16 2 C 0.22 10.76 2.60 44.17 0.11 10.87 16 3 H -0.02 -0.97 7.80 -2.39 -0.02 -0.98 16 4 C -0.54 -28.85 8.59 25.60 0.22 -28.63 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.14 11.32 21.45 0.24 -51.89 16 8 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 N -0.69 -27.69 6.30 -495.44 -3.12 -30.82 16 13 C 0.05 1.53 5.03 86.30 0.43 1.96 16 14 C 0.07 1.62 4.06 30.97 0.13 1.74 16 15 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 16 C 0.08 0.98 7.70 86.64 0.67 1.65 16 17 N -0.72 -13.13 6.40 -590.40 -3.78 -16.91 16 18 C 0.63 19.74 9.16 129.91 1.19 20.93 16 19 O -0.59 -23.44 18.04 19.65 0.35 -23.09 16 20 O -0.34 -11.09 10.82 -47.37 -0.51 -11.60 16 21 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 22 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 23 H 0.02 0.83 7.45 -2.39 -0.02 0.82 16 24 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 25 H 0.34 12.62 8.22 -89.69 -0.74 11.88 16 26 H 0.07 1.78 8.05 -2.39 -0.02 1.76 16 27 H 0.06 1.94 7.44 -2.39 -0.02 1.93 16 28 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.11 1.10 7.73 -2.39 -0.02 1.08 16 30 H 0.45 5.65 8.96 -92.71 -0.83 4.82 16 Total: -1.00 -72.40 257.46 -1.33 -73.73 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -0.41 Total: 11.35 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 3.86 Total: 4.46 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -6.66 Total: -99.62 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.16 Total: -34.69 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.40 -1.33 -73.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308165215.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.000 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds