Wall clock time and date at job start Mon Mar 30 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.50700 * 109.46892 * 239.99890 * 2 1 3 5 5 H 1.07997 * 119.99535 * 239.99869 * 4 2 1 6 6 C 1.37875 * 120.00082 * 60.00393 * 4 2 1 7 7 N 1.31518 * 120.00183 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47115 * 59.99894 * 8 6 4 10 10 H 1.48500 * 109.47186 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47293 * 299.99919 * 8 6 4 12 12 N 1.46895 * 109.46835 * 120.00025 * 2 1 3 13 13 C 1.46907 * 110.99906 * 274.99922 * 12 2 1 14 14 C 1.52996 * 109.46815 * 180.02562 * 13 12 2 15 15 H 1.09003 * 110.58321 * 303.74550 * 14 13 12 16 16 C 1.54097 * 110.51957 * 181.04171 * 14 13 12 17 17 N 1.47095 * 103.77489 * 241.37061 * 16 14 13 18 18 C 1.34000 * 108.88418 * 359.97438 * 17 16 14 19 19 O 1.21507 * 123.07495 * 180.02562 * 18 17 16 20 20 O 1.33774 * 113.85818 * 359.97438 * 18 17 16 21 21 H 1.08995 * 109.47090 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47118 * 300.00474 * 1 2 3 23 23 H 1.08999 * 109.46688 * 59.99869 * 1 2 3 24 24 H 0.96994 * 119.99674 * 179.97438 * 7 6 4 25 25 H 1.00897 * 111.00269 * 151.04616 * 12 2 1 26 26 H 1.09000 * 109.46921 * 60.00258 * 13 12 2 27 27 H 1.08996 * 109.47248 * 300.00006 * 13 12 2 28 28 H 1.08998 * 110.56195 * 122.80038 * 16 14 13 29 29 H 1.08995 * 110.68550 * 0.02562 * 16 14 13 30 30 H 0.97004 * 125.55815 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8270 -0.4200 -5.2204 11 1 3.8076 -1.1191 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2227 2.3469 14 6 2.5961 -0.5329 3.5741 15 1 1.9696 -1.4007 3.7799 16 6 2.6470 0.3993 4.8001 17 7 4.0712 0.4175 5.1674 18 6 4.7489 -0.3634 4.3151 19 8 5.9500 -0.5339 4.3839 20 8 3.9822 -0.9391 3.3822 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7089 1.1612 -3.4844 25 1 2.9173 -1.1205 1.0288 26 1 1.0870 0.6163 2.5525 27 1 2.7588 1.0462 2.1183 28 1 2.0467 -0.0062 5.6145 29 1 2.3063 1.4006 4.5368 30 1 4.4570 0.9139 5.9062 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308165216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:38 Heat of formation + Delta-G solvation = -75.174430 kcal Electronic energy + Delta-G solvation = -14368.502368 eV Core-core repulsion = 11777.951967 eV Total energy + Delta-G solvation = -2590.550401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46230 -37.35814 -35.79167 -34.70893 -32.80188 -30.50276 -27.90550 -25.36488 -24.33398 -22.57521 -21.74966 -19.82636 -18.06335 -17.13800 -16.63814 -16.07617 -15.05265 -14.68822 -14.62463 -14.02454 -13.88994 -13.43876 -12.99516 -12.58781 -12.06264 -11.82740 -11.32467 -10.92644 -10.77995 -10.62563 -10.58562 -10.28983 -10.17635 -9.94804 -9.44343 -8.88296 -8.49815 -7.41886 -6.05173 -4.11491 2.73590 2.80624 3.32313 3.35880 3.39700 3.57779 4.06643 4.40277 4.62131 4.85490 5.16964 5.25505 5.30162 5.41836 5.64288 5.93649 6.08943 6.69397 6.78706 7.05208 7.14107 7.33030 7.40601 7.75485 7.83388 8.10833 8.21602 8.29197 8.58666 8.97538 9.54737 11.01286 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.045754 B = 0.006753 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.821594 B = 4145.156685 C = 4572.428376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.686 5.686 13 C 0.053 3.947 14 C 0.072 3.928 15 H 0.123 0.877 16 C 0.069 3.931 17 N -0.740 5.740 18 C 0.644 3.356 19 O -0.533 6.533 20 O -0.317 6.317 21 H 0.033 0.967 22 H 0.003 0.997 23 H 0.081 0.919 24 H 0.262 0.738 25 H 0.340 0.660 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 1.109 13.865 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.318 5.318 13 C -0.077 4.077 14 C 0.016 3.984 15 H 0.141 0.859 16 C -0.056 4.056 17 N -0.413 5.413 18 C 0.396 3.604 19 O -0.418 6.418 20 O -0.227 6.227 21 H 0.052 0.948 22 H 0.023 0.977 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.158 0.842 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.536 0.631 13.553 13.578 hybrid contribution 1.010 0.490 -0.664 1.304 sum 0.475 1.120 12.889 12.946 Atomic orbital electron populations 1.21731 0.97729 0.99475 0.99389 1.19130 0.92642 0.92377 0.85476 0.98061 1.21228 1.31570 1.12673 0.90395 0.92106 1.24911 0.94969 0.94984 0.99088 1.69879 1.36610 1.22888 1.23650 0.86557 0.79189 0.79776 0.81890 1.20124 1.21286 1.20247 1.60782 1.32857 1.32229 1.05961 1.22264 1.00276 0.94247 0.90930 1.24180 0.80108 0.98792 0.95329 0.85934 1.22880 0.82978 1.02087 0.97659 1.45959 1.08726 1.51891 1.34712 1.18667 0.85749 0.77537 0.78400 1.91048 1.10142 1.66186 1.74441 1.87376 1.20639 1.65169 1.49475 0.94802 0.97749 0.90002 0.92835 0.84212 0.89329 0.95132 0.88917 0.88791 0.72592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.19 37.16 0.34 -2.64 16 2 C 0.21 5.23 2.60 -68.86 -0.18 5.05 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -14.30 8.59 -34.44 -0.30 -14.60 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.69 -14.15 6.30 -107.95 -0.68 -14.83 16 13 C 0.05 0.84 5.06 -3.82 -0.02 0.83 16 14 C 0.07 0.90 4.10 -26.16 -0.11 0.80 16 15 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.07 0.59 7.71 -3.14 -0.02 0.57 16 17 N -0.74 -7.75 6.40 -64.73 -0.41 -8.17 16 18 C 0.64 10.14 9.16 53.71 0.49 10.63 16 19 O -0.53 -10.40 18.04 -19.11 -0.34 -10.74 16 20 O -0.32 -5.19 10.44 -37.84 -0.39 -5.59 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 23 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.34 7.32 7.89 -39.29 -0.31 7.01 16 26 H 0.09 1.28 7.44 -51.93 -0.39 0.89 16 27 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.68 7.74 -51.93 -0.40 0.28 16 30 H 0.43 3.35 8.96 -40.82 -0.37 2.99 16 LS Contribution 256.82 15.07 3.87 3.87 Total: -1.00 -32.19 256.82 -6.04 -38.22 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.79 Total: 3.24 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 0.11 Total: 2.27 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.47 Total: -47.65 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.74 Total: -16.33 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.19 -6.04 -38.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308165216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.951 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds