Wall clock time and date at job start Mon Mar 30 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.50700 * 109.46892 * 239.99890 * 2 1 3 5 5 H 1.07997 * 119.99535 * 239.99869 * 4 2 1 6 6 C 1.37875 * 120.00082 * 60.00393 * 4 2 1 7 7 N 1.31518 * 120.00183 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47115 * 59.99894 * 8 6 4 10 10 H 1.48500 * 109.47186 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47293 * 299.99919 * 8 6 4 12 12 N 1.46895 * 109.46835 * 120.00025 * 2 1 3 13 13 C 1.46907 * 110.99906 * 274.99922 * 12 2 1 14 14 C 1.52996 * 109.46815 * 180.02562 * 13 12 2 15 15 H 1.09003 * 110.58321 * 303.74550 * 14 13 12 16 16 C 1.54097 * 110.51957 * 181.04171 * 14 13 12 17 17 N 1.47095 * 103.77489 * 241.37061 * 16 14 13 18 18 C 1.34000 * 108.88418 * 359.97438 * 17 16 14 19 19 O 1.21507 * 123.07495 * 180.02562 * 18 17 16 20 20 O 1.33774 * 113.85818 * 359.97438 * 18 17 16 21 21 H 1.08995 * 109.47090 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47118 * 300.00474 * 1 2 3 23 23 H 1.08999 * 109.46688 * 59.99869 * 1 2 3 24 24 H 0.96994 * 119.99674 * 179.97438 * 7 6 4 25 25 H 1.00897 * 111.00269 * 151.04616 * 12 2 1 26 26 H 1.09000 * 109.46921 * 60.00258 * 13 12 2 27 27 H 1.08996 * 109.47248 * 300.00006 * 13 12 2 28 28 H 1.08998 * 110.56195 * 122.80038 * 16 14 13 29 29 H 1.08995 * 110.68550 * 0.02562 * 16 14 13 30 30 H 0.97004 * 125.55815 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8270 -0.4200 -5.2204 11 1 3.8076 -1.1191 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2227 2.3469 14 6 2.5961 -0.5329 3.5741 15 1 1.9696 -1.4007 3.7799 16 6 2.6470 0.3993 4.8001 17 7 4.0712 0.4175 5.1674 18 6 4.7489 -0.3634 4.3151 19 8 5.9500 -0.5339 4.3839 20 8 3.9822 -0.9391 3.3822 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7089 1.1612 -3.4844 25 1 2.9173 -1.1205 1.0288 26 1 1.0870 0.6163 2.5525 27 1 2.7588 1.0462 2.1183 28 1 2.0467 -0.0062 5.6145 29 1 2.3063 1.4006 4.5368 30 1 4.4570 0.9139 5.9062 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308165216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:38 Heat of formation + Delta-G solvation = -102.084532 kcal Electronic energy + Delta-G solvation = -14369.669277 eV Core-core repulsion = 11777.951967 eV Total energy + Delta-G solvation = -2591.717311 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.55500 -38.67152 -37.49102 -35.70294 -34.66348 -32.03936 -29.42077 -27.33841 -25.61942 -23.71267 -22.89166 -21.69947 -19.13362 -18.72101 -17.93985 -17.44544 -16.87535 -16.09175 -15.87738 -15.46523 -15.27519 -14.56690 -14.46881 -14.08627 -13.47266 -13.24581 -13.07307 -12.77837 -12.62077 -12.28630 -12.17485 -12.02460 -11.84164 -11.54457 -10.90513 -10.57928 -10.31772 -9.13279 -8.15173 -6.28678 1.41881 1.42961 1.50816 1.60996 1.77563 2.40578 2.63244 3.10766 3.14714 3.61309 3.86344 4.00729 4.35507 4.54457 4.61244 4.73870 4.86339 4.92833 5.09909 5.22938 5.48551 5.65194 5.82380 5.87537 6.24118 6.26322 6.40343 6.72657 6.93823 7.05513 7.41577 8.89986 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.045754 B = 0.006753 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.821594 B = 4145.156685 C = 4572.428376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.276 1.276 12 N -0.685 5.685 13 C 0.052 3.948 14 C 0.071 3.929 15 H 0.141 0.859 16 C 0.078 3.922 17 N -0.716 5.716 18 C 0.636 3.364 19 O -0.583 6.583 20 O -0.347 6.347 21 H 0.029 0.971 22 H 0.034 0.966 23 H 0.055 0.945 24 H 0.263 0.737 25 H 0.331 0.669 26 H 0.110 0.890 27 H 0.016 0.984 28 H 0.138 0.862 29 H 0.115 0.885 30 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 1.130 15.207 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.012 1.012 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.201 1.201 12 N -0.315 5.315 13 C -0.078 4.078 14 C 0.016 3.984 15 H 0.159 0.841 16 C -0.046 4.046 17 N -0.390 5.390 18 C 0.389 3.611 19 O -0.473 6.473 20 O -0.256 6.256 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.128 0.872 27 H 0.034 0.966 28 H 0.156 0.844 29 H 0.133 0.867 30 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -1.497 0.676 14.938 15.028 hybrid contribution 1.249 0.520 -1.045 1.709 sum -0.248 1.195 13.893 13.946 Atomic orbital electron populations 1.21532 0.96880 0.99152 0.99558 1.18949 0.93257 0.90664 0.86582 1.01157 1.21598 1.31822 1.12808 0.92011 0.92768 1.25670 0.95139 0.95684 1.01859 1.69992 1.37279 1.23861 1.24286 0.85606 0.78547 0.78865 0.78583 1.19540 1.20585 1.20104 1.60702 1.32253 1.32861 1.05721 1.22418 1.01395 0.93481 0.90517 1.24330 0.78568 1.00163 0.95337 0.84118 1.23121 0.81918 1.02554 0.96990 1.45873 1.09365 1.50068 1.33659 1.18878 0.85352 0.78004 0.78872 1.90998 1.12391 1.68087 1.75817 1.87339 1.22422 1.65668 1.50219 0.95178 0.94715 0.92657 0.92739 0.85199 0.87219 0.96580 0.84408 0.86672 0.70839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.32 9.19 71.98 0.66 -4.66 16 2 C 0.21 10.67 2.60 44.17 0.11 10.79 16 3 H -0.03 -1.60 7.80 -2.39 -0.02 -1.62 16 4 C -0.54 -30.28 8.59 25.60 0.22 -30.06 16 5 H 0.05 3.01 7.62 -2.91 -0.02 2.99 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -52.36 11.32 21.45 0.24 -52.12 16 8 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 N -0.69 -27.92 6.30 -495.44 -3.12 -31.04 16 13 C 0.05 1.55 5.06 86.30 0.44 1.99 16 14 C 0.07 1.60 4.10 30.96 0.13 1.73 16 15 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 16 C 0.08 0.99 7.71 86.64 0.67 1.66 16 17 N -0.72 -12.99 6.40 -590.41 -3.78 -16.77 16 18 C 0.64 19.52 9.16 129.91 1.19 20.71 16 19 O -0.58 -23.08 18.04 19.66 0.35 -22.73 16 20 O -0.35 -11.10 10.44 -47.34 -0.49 -11.60 16 21 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.03 1.37 7.45 -2.39 -0.02 1.35 16 23 H 0.05 2.91 6.07 -2.39 -0.01 2.89 16 24 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 25 H 0.33 14.42 7.89 -89.70 -0.71 13.71 16 26 H 0.11 2.82 7.44 -2.39 -0.02 2.80 16 27 H 0.02 0.53 8.05 -2.39 -0.02 0.51 16 28 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.12 1.10 7.74 -2.39 -0.02 1.08 16 30 H 0.45 5.59 8.96 -92.71 -0.83 4.76 16 Total: -1.00 -71.66 256.82 -1.28 -72.94 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -0.38 Total: 11.77 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 3.87 Total: 3.50 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -6.66 Total: -99.93 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.14 Total: -34.32 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.66 -1.28 -72.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308165216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.140 kcal (2) G-P(sol) polarization free energy of solvation -71.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds