Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47163 * 2 1 4 4 C 1.50701 * 109.47006 * 240.00200 * 2 1 3 5 5 H 1.07994 * 120.00067 * 239.99703 * 4 2 1 6 6 C 1.37876 * 119.99765 * 59.99977 * 4 2 1 7 7 N 1.31513 * 120.00375 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99789 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47427 * 89.99972 * 8 6 4 10 10 H 1.48504 * 109.47102 * 209.99874 * 8 6 4 11 11 H 1.48500 * 109.47099 * 329.99584 * 8 6 4 12 12 N 1.46903 * 109.47441 * 120.00616 * 2 1 3 13 13 C 1.46906 * 110.99295 * 274.99651 * 12 2 1 14 14 C 1.53003 * 109.46586 * 179.97438 * 13 12 2 15 15 H 1.09005 * 110.57409 * 61.25744 * 14 13 12 16 16 C 1.54094 * 110.34059 * 184.06329 * 14 13 12 17 17 N 1.47095 * 103.77641 * 118.86956 * 16 14 13 18 18 C 1.34005 * 108.87740 * 359.66060 * 17 16 14 19 19 O 1.21517 * 123.07084 * 180.20498 * 18 17 16 20 20 O 1.33772 * 113.86188 * 0.23087 * 18 17 16 21 21 H 1.09007 * 109.47316 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46920 * 299.99290 * 1 2 3 23 23 H 1.08997 * 109.47666 * 59.99757 * 1 2 3 24 24 H 0.96996 * 120.00457 * 180.02562 * 7 6 4 25 25 H 1.00893 * 110.99995 * 38.94980 * 12 2 1 26 26 H 1.09002 * 109.47288 * 60.00600 * 13 12 2 27 27 H 1.08995 * 109.47343 * 299.99792 * 13 12 2 28 28 H 1.09007 * 110.65829 * 0.25285 * 16 14 13 29 29 H 1.08996 * 110.47334 * 237.39567 * 16 14 13 30 30 H 0.97001 * 125.56314 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3468 14 6 2.5952 -0.5333 3.5744 15 1 3.5999 -0.9167 3.3962 16 6 2.5732 0.3813 4.8143 17 7 1.6526 -0.3011 5.7366 18 6 1.1995 -1.4174 5.1499 19 8 0.4166 -2.1771 5.6853 20 8 1.6881 -1.6195 3.9211 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 0.7080 1.1610 -3.4843 25 1 1.4496 -1.4980 1.4099 26 1 1.0871 0.6162 2.5526 27 1 2.7589 1.0461 2.1182 28 1 2.1936 1.3700 4.5562 29 1 3.5688 0.4544 5.2518 30 1 1.4092 0.0090 6.6229 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308165217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -100.846712 kcal Electronic energy + Delta-G solvation = -14396.772643 eV Core-core repulsion = 11805.109008 eV Total energy + Delta-G solvation = -2591.663635 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.55128 -38.68329 -37.54429 -35.69696 -34.63046 -32.07904 -29.29679 -27.24768 -25.57610 -23.71702 -22.86219 -22.06505 -19.11509 -18.57525 -17.95605 -17.44165 -16.75047 -16.18829 -15.87498 -15.42605 -15.06145 -14.63584 -14.44250 -13.92829 -13.68516 -13.22716 -13.10633 -12.81985 -12.68374 -12.30019 -12.17547 -11.99221 -11.83551 -11.60690 -11.02923 -10.48046 -10.31491 -9.02724 -8.09318 -6.19977 1.44689 1.45819 1.56439 1.61744 1.77689 2.45357 2.63926 3.13140 3.19688 3.61662 3.88924 4.01482 4.34199 4.56594 4.59813 4.71790 4.77110 4.87645 4.91466 5.09260 5.38650 5.68978 5.79824 5.83058 6.24907 6.27690 6.60356 6.75844 6.93356 7.06061 7.49908 8.96294 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.059998 B = 0.006193 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.569426 B = 4520.162186 C = 4552.993907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.015 0.985 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.686 5.686 13 C 0.051 3.949 14 C 0.071 3.929 15 H 0.139 0.861 16 C 0.078 3.922 17 N -0.716 5.716 18 C 0.636 3.364 19 O -0.583 6.583 20 O -0.345 6.345 21 H 0.024 0.976 22 H 0.023 0.977 23 H 0.064 0.936 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.023 0.977 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.137 0.863 30 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 3.164 13.828 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.107 3.893 3 H 0.033 0.967 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.316 5.316 13 C -0.079 4.079 14 C 0.016 3.984 15 H 0.157 0.843 16 C -0.046 4.046 17 N -0.390 5.390 18 C 0.389 3.611 19 O -0.473 6.473 20 O -0.254 6.254 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.041 0.959 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 5.538 2.753 13.455 14.808 hybrid contribution -1.111 -0.067 -0.474 1.210 sum 4.427 2.686 12.981 13.975 Atomic orbital electron populations 1.22272 1.00570 0.98874 1.00043 1.18960 0.89605 0.93232 0.87470 0.96692 1.21467 1.30459 1.12484 0.91096 0.92712 1.25698 0.95469 0.95860 1.01864 1.69990 1.38008 1.24262 1.24027 0.85527 0.78792 0.78175 0.78925 1.20550 1.20842 1.19346 1.60701 1.57885 1.09510 1.03481 1.22415 0.99939 0.95879 0.89649 1.24332 0.94225 0.84925 0.94912 0.84333 1.23124 0.97212 0.97006 0.87265 1.45879 1.48612 1.23539 1.20960 1.18879 0.79738 0.82214 0.80258 1.91002 1.38639 1.51631 1.66004 1.87332 1.59452 1.47814 1.30842 0.95715 0.95819 0.91731 0.92978 0.85289 0.95879 0.87654 0.86666 0.84548 0.70860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.94 71.98 0.64 -7.05 16 2 C 0.22 10.64 2.57 44.17 0.11 10.75 16 3 H 0.02 0.80 7.80 -2.39 -0.02 0.78 16 4 C -0.52 -28.43 8.84 25.60 0.23 -28.20 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -52.58 11.32 21.45 0.24 -52.33 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.69 -27.78 6.23 -495.43 -3.09 -30.86 16 13 C 0.05 1.50 5.07 86.30 0.44 1.94 16 14 C 0.07 1.59 4.14 30.97 0.13 1.71 16 15 H 0.14 2.67 8.14 -2.38 -0.02 2.65 16 16 C 0.08 0.98 7.70 86.64 0.67 1.64 16 17 N -0.72 -12.71 6.40 -590.39 -3.78 -16.49 16 18 C 0.64 19.09 9.16 129.91 1.19 20.28 16 19 O -0.58 -22.64 18.04 19.63 0.35 -22.29 16 20 O -0.34 -10.77 10.25 -47.32 -0.48 -11.25 16 21 H 0.02 1.17 8.13 -2.38 -0.02 1.15 16 22 H 0.02 1.01 7.45 -2.38 -0.02 0.99 16 23 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.33 13.86 7.97 -89.70 -0.71 13.15 16 26 H 0.02 0.71 7.44 -2.39 -0.02 0.70 16 27 H 0.11 2.77 8.05 -2.39 -0.02 2.75 16 28 H 0.12 1.08 7.73 -2.38 -0.02 1.06 16 29 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.45 5.44 8.96 -92.71 -0.83 4.61 16 Total: -1.00 -70.71 256.83 -1.26 -71.97 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.38 Total: 13.47 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 3.85 Total: 2.03 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -6.62 Total: -99.68 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.13 Total: -33.54 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.71 -1.26 -71.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308165217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.877 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds