Wall clock time and date at job start Mon Mar 30 2020 02:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 H 1.09003 * 110.50244 * 66.29446 * 14 13 12 16 16 C 1.54091 * 110.56403 * 189.18938 * 14 13 12 17 17 O 1.45706 * 104.00599 * 118.57298 * 16 14 13 18 18 C 1.33762 * 109.47814 * 0.02562 * 17 16 14 19 19 O 1.21508 * 123.07342 * 179.97438 * 18 17 16 20 20 N 1.34012 * 113.85768 * 359.97438 * 18 17 16 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 26 26 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 27 27 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 28 28 H 1.08993 * 110.52401 * 237.20605 * 16 14 13 29 29 H 1.09000 * 110.51662 * 359.94830 * 16 14 13 30 30 H 0.96997 * 125.55824 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 1 1.8766 -1.2900 -3.8851 16 6 2.8898 0.4456 -4.7281 17 8 4.3166 0.2826 -4.9741 18 6 4.8137 -0.6279 -4.1296 19 8 5.9839 -0.9552 -4.1210 20 7 3.9033 -1.1461 -3.2939 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7089 1.1611 3.4845 25 1 2.9172 -1.1204 -1.0288 26 1 1.0871 0.6165 -2.5525 27 1 2.7588 1.0464 -2.1181 28 1 2.3158 0.1745 -5.6142 29 1 2.6685 1.4694 -4.4266 30 1 4.0777 -1.8168 -2.6153 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308167002.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:42 Heat of formation + Delta-G solvation = -99.981121 kcal Electronic energy + Delta-G solvation = -14414.312351 eV Core-core repulsion = 11822.686251 eV Total energy + Delta-G solvation = -2591.626100 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59235 -38.55846 -37.84851 -35.94872 -34.17958 -31.67367 -29.72379 -27.37269 -25.93206 -23.40637 -22.86372 -21.66084 -19.19071 -18.69736 -18.13217 -17.41419 -16.89310 -16.20036 -15.90294 -15.38508 -15.16388 -14.74446 -14.55200 -14.00403 -13.45890 -13.29223 -13.02909 -12.74629 -12.55213 -12.26897 -12.17044 -11.88347 -11.87643 -11.65643 -10.91929 -10.59259 -10.35307 -9.13610 -8.15499 -6.29204 1.42386 1.42703 1.50344 1.59896 1.73570 2.39635 2.65565 3.10119 3.15028 3.67031 3.86949 4.02668 4.31708 4.51137 4.60365 4.75444 4.88519 4.94532 5.09891 5.23319 5.47796 5.64389 5.76828 5.86513 6.23093 6.24368 6.38453 6.71761 6.94523 7.00485 7.41388 8.89548 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.043792 B = 0.006945 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.233614 B = 4030.843982 C = 4483.928170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.030 1.030 4 C -0.542 4.542 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.284 1.284 10 H -0.270 1.270 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.049 3.951 14 C 0.105 3.895 15 H 0.135 0.865 16 C 0.045 3.955 17 O -0.344 6.344 18 C 0.643 3.357 19 O -0.581 6.581 20 N -0.718 5.718 21 H 0.053 0.947 22 H 0.031 0.969 23 H 0.030 0.970 24 H 0.263 0.737 25 H 0.329 0.671 26 H 0.098 0.902 27 H 0.015 0.985 28 H 0.149 0.851 29 H 0.123 0.877 30 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 -1.203 -12.048 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.012 1.012 4 C -0.580 4.580 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.783 3.217 9 H -0.210 1.210 10 H -0.195 1.195 11 H -0.200 1.200 12 N -0.312 5.312 13 C -0.081 4.081 14 C 0.000 4.000 15 H 0.153 0.847 16 C -0.029 4.029 17 O -0.253 6.253 18 C 0.396 3.604 19 O -0.471 6.471 20 N -0.389 5.389 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.146 0.854 26 H 0.116 0.884 27 H 0.033 0.967 28 H 0.167 0.833 29 H 0.141 0.859 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.320 -1.223 -12.387 12.517 hybrid contribution 1.013 0.032 1.799 2.065 sum -0.307 -1.191 -10.588 10.660 Atomic orbital electron populations 1.21536 0.97172 0.99114 0.99401 1.18914 0.93072 0.90702 0.86635 1.01232 1.21596 1.31800 1.12810 0.91797 0.92288 1.25678 0.95183 0.95651 1.01941 1.70000 1.37333 1.23909 1.24241 0.85617 0.78574 0.78834 0.78635 1.20995 1.19513 1.19987 1.60678 1.31850 1.33091 1.05534 1.22450 1.01349 0.93633 0.90717 1.22667 0.85754 0.96771 0.94796 0.84714 1.24832 0.76102 1.02297 0.99718 1.87212 1.27685 1.55853 1.54590 1.18641 0.85143 0.78081 0.78507 1.91011 1.16397 1.65513 1.74149 1.46116 1.09325 1.44890 1.38594 0.92840 0.94971 0.95124 0.92825 0.85354 0.88414 0.96652 0.83325 0.85949 0.71728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.20 9.19 71.98 0.66 -4.53 16 2 C 0.22 10.15 2.60 44.17 0.11 10.27 16 3 H -0.03 -1.58 7.80 -2.39 -0.02 -1.60 16 4 C -0.54 -28.53 8.59 25.60 0.22 -28.31 16 5 H 0.06 3.03 7.62 -2.91 -0.02 3.01 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -51.30 11.32 21.45 0.24 -51.06 16 8 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 N -0.68 -24.64 6.30 -495.46 -3.12 -27.76 16 13 C 0.05 1.33 5.09 86.30 0.44 1.77 16 14 C 0.11 2.05 4.06 45.25 0.18 2.23 16 15 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.04 0.68 7.88 72.35 0.57 1.25 16 17 O -0.34 -8.86 11.09 -47.23 -0.52 -9.39 16 18 C 0.64 19.75 9.16 129.91 1.19 20.94 16 19 O -0.58 -22.98 18.04 19.66 0.35 -22.63 16 20 N -0.72 -17.81 5.63 -569.86 -3.21 -21.02 16 21 H 0.05 2.75 6.07 -2.39 -0.01 2.74 16 22 H 0.03 1.24 7.45 -2.38 -0.02 1.22 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.33 11.88 6.93 -89.70 -0.62 11.26 16 26 H 0.10 2.42 7.44 -2.39 -0.02 2.40 16 27 H 0.02 0.47 8.05 -2.39 -0.02 0.45 16 28 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.12 1.54 7.73 -2.39 -0.02 1.52 16 30 H 0.44 10.69 8.10 -92.71 -0.75 9.94 16 Total: -1.00 -67.09 255.03 -0.61 -67.70 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.21 Total: 14.68 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 3.83 Total: 4.87 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -6.09 Total: -99.84 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.17 Total: -32.01 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -67.09 -0.61 -67.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308167002.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.279 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds