Wall clock time and date at job start Mon Mar 30 2020 02:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 C 1.50698 * 109.47415 * 120.00372 * 2 1 3 5 5 H 1.07994 * 120.00477 * 120.00150 * 4 2 1 6 6 C 1.37882 * 119.99585 * 299.99468 * 4 2 1 7 7 N 1.31510 * 120.00188 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00019 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46888 * 90.00487 * 8 6 4 10 10 H 1.48501 * 109.47338 * 210.00435 * 8 6 4 11 11 H 1.48506 * 109.47056 * 330.00849 * 8 6 4 12 12 N 1.46902 * 109.47183 * 240.00302 * 2 1 3 13 13 C 1.46895 * 111.00141 * 84.99699 * 12 2 1 14 14 C 1.53003 * 109.46988 * 179.97438 * 13 12 2 15 15 H 1.08993 * 110.50970 * 293.71691 * 14 13 12 16 16 C 1.54090 * 110.68906 * 170.88447 * 14 13 12 17 17 O 1.45705 * 104.00976 * 241.16989 * 16 14 13 18 18 C 1.33775 * 109.47563 * 0.34094 * 17 16 14 19 19 O 1.21513 * 123.07329 * 179.89652 * 18 17 16 20 20 N 1.34009 * 113.85453 * 359.62776 * 18 17 16 21 21 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46811 * 300.00142 * 1 2 3 23 23 H 1.08996 * 109.47097 * 60.00043 * 1 2 3 24 24 H 0.97000 * 120.00283 * 180.02562 * 7 6 4 25 25 H 1.00905 * 110.99662 * 321.04543 * 12 2 1 26 26 H 1.08994 * 109.47081 * 60.00465 * 13 12 2 27 27 H 1.09000 * 109.47425 * 300.00075 * 13 12 2 28 28 H 1.09001 * 110.52440 * 359.97438 * 16 14 13 29 29 H 1.08997 * 110.52151 * 122.73714 * 16 14 13 30 30 H 0.96992 * 125.55704 * 180.25420 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5663 3.7119 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5962 -0.5328 -3.5742 15 1 3.6323 -0.8383 -3.4285 16 6 2.4601 0.3320 -4.8422 17 8 1.5624 -0.4340 -5.6969 18 6 1.2028 -1.5599 -5.0704 19 8 0.4545 -2.3819 -5.5613 20 7 1.7476 -1.7012 -3.8543 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7090 1.1613 3.4844 25 1 1.4495 -1.4979 -1.4101 26 1 2.7588 1.0462 -2.1182 27 1 1.0870 0.6164 -2.5525 28 1 2.0254 1.3015 -4.5987 29 1 3.4291 0.4568 -5.3255 30 1 1.6059 -2.4517 -3.2564 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308167003.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:45 Heat of formation + Delta-G solvation = -74.215235 kcal Electronic energy + Delta-G solvation = -14422.470755 eV Core-core repulsion = 11831.961947 eV Total energy + Delta-G solvation = -2590.508807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.52414 -37.27430 -36.48870 -34.57610 -32.42770 -30.38745 -28.17429 -25.29854 -24.65805 -22.27418 -21.72762 -20.26158 -18.10751 -17.28264 -16.62540 -16.06928 -14.97046 -14.83444 -14.71047 -14.19676 -13.65782 -13.58087 -12.89674 -12.54904 -12.20426 -11.75116 -11.55334 -10.99153 -10.88944 -10.73208 -10.59496 -10.54579 -10.24131 -9.99543 -9.36982 -9.06952 -8.44977 -7.48664 -6.07475 -4.11624 2.74947 2.80628 3.27486 3.34234 3.37756 3.59319 4.04682 4.38105 4.61508 4.85333 5.15673 5.23642 5.24561 5.42528 5.53762 5.93022 6.02912 6.57097 6.72607 6.84744 6.95592 7.17313 7.30721 7.61937 7.75567 8.12152 8.15260 8.30750 8.45071 8.95003 9.54304 10.99559 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058538 B = 0.006264 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.209098 B = 4468.771747 C = 4524.790657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.049 3.951 14 C 0.097 3.903 15 H 0.109 0.891 16 C 0.044 3.956 17 O -0.333 6.333 18 C 0.644 3.356 19 O -0.534 6.534 20 N -0.725 5.725 21 H 0.028 0.972 22 H 0.090 0.910 23 H 0.004 0.996 24 H 0.261 0.739 25 H 0.323 0.677 26 H 0.085 0.915 27 H 0.029 0.971 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 0.452 -10.051 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.082 4.082 14 C -0.009 4.009 15 H 0.127 0.873 16 C -0.032 4.032 17 O -0.243 6.243 18 C 0.397 3.603 19 O -0.420 6.420 20 N -0.397 5.397 21 H 0.047 0.953 22 H 0.109 0.891 23 H 0.023 0.977 24 H 0.071 0.929 25 H 0.140 0.860 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 4.179 0.460 -10.334 11.156 hybrid contribution -0.661 -0.494 1.169 1.431 sum 3.518 -0.035 -9.165 9.817 Atomic orbital electron populations 1.22438 1.00528 0.99348 1.00612 1.19193 0.89720 0.94444 0.86169 0.94670 1.21123 1.30524 1.12626 0.89518 0.91865 1.24956 0.95202 0.95186 0.99135 1.69872 1.37037 1.23177 1.23530 0.86483 0.78463 0.80007 0.82339 1.20704 1.21366 1.19913 1.60889 1.58045 1.08946 1.03217 1.22325 0.99483 0.96148 0.90251 1.22590 0.97132 0.86057 0.95151 0.87309 1.24426 0.94578 0.95697 0.88450 1.87235 1.62141 1.32502 1.42428 1.18547 0.79791 0.81240 0.80754 1.91056 1.38598 1.42257 1.70048 1.46081 1.50320 1.24986 1.18351 0.95275 0.89092 0.97650 0.92944 0.86001 0.89690 0.95300 0.87464 0.87512 0.71897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 8.94 37.16 0.33 -3.59 16 2 C 0.21 4.97 2.57 -68.87 -0.18 4.79 16 3 H 0.04 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.50 -13.16 8.84 -34.44 -0.30 -13.46 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 N -0.68 -12.64 6.23 -107.96 -0.67 -13.31 16 13 C 0.05 0.71 5.10 -3.83 -0.02 0.69 16 14 C 0.10 1.08 4.06 -67.04 -0.27 0.81 16 15 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.04 0.41 7.88 37.73 0.30 0.71 16 17 O -0.33 -4.57 11.09 -37.84 -0.42 -4.99 16 18 C 0.64 10.02 9.16 53.71 0.49 10.52 16 19 O -0.53 -10.31 18.04 -19.12 -0.34 -10.66 16 20 N -0.72 -9.38 5.63 -58.23 -0.33 -9.71 16 21 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 22 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 23 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.32 5.76 7.18 -39.29 -0.28 5.48 16 26 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 27 H 0.03 0.44 7.43 -51.93 -0.39 0.06 16 28 H 0.11 0.86 7.74 -51.93 -0.40 0.46 16 29 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.44 5.41 8.10 -40.82 -0.33 5.08 16 LS Contribution 255.37 15.07 3.85 3.85 Total: -1.00 -30.74 255.37 -5.79 -36.53 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.74 Total: 4.85 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 0.25 Total: 1.86 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.37 Total: -47.26 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.76 Total: -15.65 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.74 -5.79 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308167003.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.686 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds