Wall clock time and date at job start Mon Mar 30 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46930 * 2 1 4 4 C 1.50693 * 109.47326 * 239.99498 * 2 1 3 5 5 H 1.07997 * 120.00721 * 245.46539 * 4 2 1 6 6 C 1.37883 * 119.99662 * 65.46556 * 4 2 1 7 7 N 1.31508 * 120.00238 * 9.54262 * 6 4 2 8 8 Si 1.86804 * 119.99652 * 189.54589 * 6 4 2 9 9 H 1.48490 * 109.47345 * 84.99457 * 8 6 4 10 10 H 1.48509 * 109.46886 * 204.99448 * 8 6 4 11 11 H 1.48499 * 109.47179 * 324.99172 * 8 6 4 12 12 N 1.46900 * 109.46802 * 119.99773 * 2 1 3 13 13 C 1.46907 * 111.00020 * 275.00062 * 12 2 1 14 14 C 1.53002 * 109.47100 * 180.02562 * 13 12 2 15 15 H 1.09009 * 110.50100 * 295.70295 * 14 13 12 16 16 C 1.54087 * 110.56314 * 172.95928 * 14 13 12 17 17 O 1.45701 * 104.00802 * 241.42560 * 16 14 13 18 18 C 1.33774 * 109.47585 * 0.02562 * 17 16 14 19 19 O 1.21515 * 123.07004 * 180.02562 * 18 17 16 20 20 N 1.34322 * 113.90429 * 359.91605 * 18 17 16 21 21 H 1.09002 * 109.47284 * 63.76096 * 1 2 3 22 22 H 1.09004 * 109.47385 * 183.75860 * 1 2 3 23 23 H 1.08993 * 109.47675 * 303.76160 * 1 2 3 24 24 H 0.97001 * 120.00237 * 180.02562 * 7 6 4 25 25 H 1.00896 * 110.99906 * 151.04418 * 12 2 1 26 26 H 1.08997 * 109.47011 * 300.00464 * 13 12 2 27 27 H 1.08999 * 109.46845 * 60.00217 * 13 12 2 28 28 H 1.08998 * 110.52062 * 0.06206 * 16 14 13 29 29 H 1.09002 * 110.52084 * 122.79325 * 16 14 13 30 30 H 0.97001 * 125.73719 * 180.11763 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5786 -1.6371 -1.1337 6 6 1.7947 -0.1774 -2.4795 7 7 1.2992 1.0354 -2.5935 8 14 2.1765 -1.1781 -4.0100 9 1 1.0248 -2.0612 -4.3241 10 1 2.4232 -0.2613 -5.1520 11 1 3.3851 -2.0071 -3.7707 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3470 14 6 2.5961 -0.5327 3.5743 15 1 1.8928 -1.3136 3.8640 16 6 2.8387 0.4388 4.7454 17 8 4.2651 0.3155 5.0162 18 6 4.8051 -0.5680 4.1692 19 8 5.9846 -0.8599 4.1784 20 7 3.9247 -1.1054 3.3088 21 1 -0.3634 0.4544 -0.9218 22 1 -0.3634 -1.0255 0.0674 23 1 -0.3634 0.5711 0.8543 24 1 1.1316 1.4103 -3.4724 25 1 2.9172 -1.1205 1.0288 26 1 2.7587 1.0463 2.1183 27 1 1.0869 0.6164 2.5525 28 1 2.5921 1.4593 4.4526 29 1 2.2570 0.1393 5.6172 30 1 4.1294 -1.7625 2.6252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308167004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:47 Heat of formation + Delta-G solvation = -77.143575 kcal Electronic energy + Delta-G solvation = -14400.427769 eV Core-core repulsion = 11809.791979 eV Total energy + Delta-G solvation = -2590.635790 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48096 -37.23985 -36.40844 -34.52966 -32.41275 -30.34970 -28.33688 -25.49781 -24.58255 -22.23989 -21.71675 -19.91645 -18.08458 -17.28677 -16.68292 -16.12356 -15.18225 -14.73795 -14.47958 -14.17961 -13.81788 -13.48917 -13.08152 -12.58796 -12.05818 -11.85858 -11.46272 -10.93994 -10.80044 -10.74140 -10.60676 -10.45881 -10.35097 -10.04791 -9.27371 -9.00225 -8.53789 -7.53830 -6.15816 -4.18847 2.76240 2.83017 3.25331 3.31926 3.34257 3.61159 4.06280 4.34577 4.62355 4.86379 5.17041 5.18762 5.23878 5.43870 5.54846 5.92916 6.06845 6.67018 6.87920 6.94083 7.00361 7.22484 7.32334 7.67119 7.69396 8.01487 8.12742 8.17423 8.47530 8.89693 9.46870 10.93301 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044367 B = 0.006871 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.953110 B = 4073.949900 C = 4475.987193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.210 3.790 3 H 0.010 0.990 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.686 5.686 13 C 0.049 3.951 14 C 0.096 3.904 15 H 0.108 0.892 16 C 0.044 3.956 17 O -0.332 6.332 18 C 0.644 3.356 19 O -0.532 6.532 20 N -0.725 5.725 21 H 0.064 0.936 22 H 0.035 0.965 23 H 0.009 0.991 24 H 0.263 0.737 25 H 0.330 0.670 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 -1.241 11.138 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 H 0.028 0.972 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.318 5.318 13 C -0.082 4.082 14 C -0.009 4.009 15 H 0.126 0.874 16 C -0.031 4.031 17 O -0.242 6.242 18 C 0.397 3.603 19 O -0.418 6.418 20 N -0.398 5.398 21 H 0.083 0.917 22 H 0.054 0.946 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -1.221 -1.229 11.478 11.608 hybrid contribution 0.719 -0.197 -1.588 1.754 sum -0.502 -1.427 9.891 10.005 Atomic orbital electron populations 1.21655 0.98051 0.98922 0.99133 1.19132 0.92235 0.92994 0.85375 0.97198 1.21177 1.36399 1.08316 0.90555 0.92146 1.24918 0.95059 0.94606 0.99145 1.69957 1.44593 1.13930 1.24039 0.86569 0.78803 0.80036 0.82356 1.20423 1.21304 1.19915 1.60786 1.31910 1.32829 1.06253 1.22341 1.00561 0.94320 0.90967 1.22568 0.85899 0.96705 0.95777 0.87410 1.24417 0.78302 1.01982 0.98437 1.87235 1.24422 1.58311 1.54271 1.18623 0.85545 0.77850 0.78297 1.91056 1.13130 1.64402 1.73218 1.46139 1.08704 1.46772 1.38214 0.91740 0.94550 0.97228 0.92761 0.85265 0.95158 0.89868 0.87472 0.87542 0.71826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.27 37.16 0.34 -2.36 16 2 C 0.21 4.95 2.47 -68.87 -0.17 4.78 16 3 H 0.01 0.27 7.74 -51.93 -0.40 -0.13 16 4 C -0.53 -13.83 8.48 -34.44 -0.29 -14.12 16 5 H 0.06 1.57 7.69 -52.49 -0.40 1.16 16 6 C 0.07 1.76 5.17 -17.82 -0.09 1.67 16 7 N -0.89 -24.80 12.16 55.43 0.67 -24.13 16 8 Si 0.89 20.79 29.55 -169.99 -5.02 15.77 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.69 -12.80 6.30 -107.95 -0.68 -13.48 16 13 C 0.05 0.72 5.07 -3.82 -0.02 0.70 16 14 C 0.10 1.09 4.04 -67.04 -0.27 0.82 16 15 H 0.11 1.06 8.14 -51.92 -0.42 0.64 16 16 C 0.04 0.42 7.88 37.72 0.30 0.72 16 17 O -0.33 -4.63 11.09 -37.84 -0.42 -5.05 16 18 C 0.64 10.22 9.16 53.85 0.49 10.72 16 19 O -0.53 -10.47 18.04 -19.12 -0.34 -10.82 16 20 N -0.73 -9.60 5.69 -58.14 -0.33 -9.93 16 21 H 0.06 1.62 6.83 -51.93 -0.35 1.26 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.01 0.18 7.55 -51.93 -0.39 -0.22 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.33 6.11 7.04 -39.29 -0.28 5.83 16 26 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 27 H 0.08 1.15 7.51 -51.93 -0.39 0.76 16 28 H 0.11 0.88 7.73 -51.93 -0.40 0.47 16 29 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.44 5.57 8.14 -40.82 -0.33 5.24 16 LS Contribution 256.71 15.07 3.87 3.87 Total: -1.00 -30.90 256.71 -5.74 -36.64 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.77 Total: 4.21 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 0.29 Total: 2.92 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.34 Total: -47.54 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.76 Total: -15.87 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.90 -5.74 -36.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308167004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.501 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds