Wall clock time and date at job start Mon Mar 30 2020 02:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46930 * 2 1 4 4 C 1.50693 * 109.47326 * 239.99498 * 2 1 3 5 5 H 1.07997 * 120.00721 * 245.46539 * 4 2 1 6 6 C 1.37883 * 119.99662 * 65.46556 * 4 2 1 7 7 N 1.31508 * 120.00238 * 9.54262 * 6 4 2 8 8 Si 1.86804 * 119.99652 * 189.54589 * 6 4 2 9 9 H 1.48490 * 109.47345 * 84.99457 * 8 6 4 10 10 H 1.48509 * 109.46886 * 204.99448 * 8 6 4 11 11 H 1.48499 * 109.47179 * 324.99172 * 8 6 4 12 12 N 1.46900 * 109.46802 * 119.99773 * 2 1 3 13 13 C 1.46907 * 111.00020 * 275.00062 * 12 2 1 14 14 C 1.53002 * 109.47100 * 180.02562 * 13 12 2 15 15 H 1.09009 * 110.50100 * 295.70295 * 14 13 12 16 16 C 1.54087 * 110.56314 * 172.95928 * 14 13 12 17 17 O 1.45701 * 104.00802 * 241.42560 * 16 14 13 18 18 C 1.33774 * 109.47585 * 0.02562 * 17 16 14 19 19 O 1.21515 * 123.07004 * 180.02562 * 18 17 16 20 20 N 1.34322 * 113.90429 * 359.91605 * 18 17 16 21 21 H 1.09002 * 109.47284 * 63.76096 * 1 2 3 22 22 H 1.09004 * 109.47385 * 183.75860 * 1 2 3 23 23 H 1.08993 * 109.47675 * 303.76160 * 1 2 3 24 24 H 0.97001 * 120.00237 * 180.02562 * 7 6 4 25 25 H 1.00896 * 110.99906 * 151.04418 * 12 2 1 26 26 H 1.08997 * 109.47011 * 300.00464 * 13 12 2 27 27 H 1.08999 * 109.46845 * 60.00217 * 13 12 2 28 28 H 1.08998 * 110.52062 * 0.06206 * 16 14 13 29 29 H 1.09002 * 110.52084 * 122.79325 * 16 14 13 30 30 H 0.97001 * 125.73719 * 180.11763 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5786 -1.6371 -1.1337 6 6 1.7947 -0.1774 -2.4795 7 7 1.2992 1.0354 -2.5935 8 14 2.1765 -1.1781 -4.0100 9 1 1.0248 -2.0612 -4.3241 10 1 2.4232 -0.2613 -5.1520 11 1 3.3851 -2.0071 -3.7707 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3470 14 6 2.5961 -0.5327 3.5743 15 1 1.8928 -1.3136 3.8640 16 6 2.8387 0.4388 4.7454 17 8 4.2651 0.3155 5.0162 18 6 4.8051 -0.5680 4.1692 19 8 5.9846 -0.8599 4.1784 20 7 3.9247 -1.1054 3.3088 21 1 -0.3634 0.4544 -0.9218 22 1 -0.3634 -1.0255 0.0674 23 1 -0.3634 0.5711 0.8543 24 1 1.1316 1.4103 -3.4724 25 1 2.9172 -1.1205 1.0288 26 1 2.7587 1.0463 2.1183 27 1 1.0869 0.6164 2.5525 28 1 2.5921 1.4593 4.4526 29 1 2.2570 0.1393 5.6172 30 1 4.1294 -1.7625 2.6252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308167004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:46 Heat of formation + Delta-G solvation = -102.199295 kcal Electronic energy + Delta-G solvation = -14401.514267 eV Core-core repulsion = 11809.791979 eV Total energy + Delta-G solvation = -2591.722287 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.56629 -38.55327 -37.83617 -35.92558 -34.16995 -31.69970 -29.77524 -27.33607 -25.93379 -23.40748 -22.85209 -21.68713 -19.18304 -18.68362 -18.12624 -17.41300 -16.88928 -16.19226 -15.88904 -15.37412 -15.16314 -14.73548 -14.54298 -14.01703 -13.46609 -13.34219 -13.06167 -12.68313 -12.61881 -12.30545 -12.24181 -11.87975 -11.84041 -11.65503 -10.94977 -10.58500 -10.33372 -9.13314 -8.19764 -6.28561 1.41174 1.42903 1.51112 1.59505 1.73238 2.39850 2.65892 3.11282 3.13216 3.67307 3.86588 4.02737 4.32501 4.51364 4.60616 4.74878 4.88688 4.94957 5.07340 5.19529 5.41829 5.64295 5.77634 5.83065 6.14613 6.23771 6.36491 6.73085 6.95460 7.00465 7.41247 8.88927 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044367 B = 0.006871 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.953110 B = 4073.949900 C = 4475.987193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.213 3.787 3 H -0.026 1.026 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.269 1.269 12 N -0.680 5.680 13 C 0.049 3.951 14 C 0.105 3.895 15 H 0.136 0.864 16 C 0.045 3.955 17 O -0.343 6.343 18 C 0.643 3.357 19 O -0.581 6.581 20 N -0.719 5.719 21 H 0.034 0.966 22 H 0.039 0.961 23 H 0.035 0.965 24 H 0.263 0.737 25 H 0.330 0.670 26 H 0.013 0.987 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.149 0.851 30 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -1.897 12.138 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 H -0.008 1.008 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.194 1.194 12 N -0.310 5.310 13 C -0.081 4.081 14 C 0.000 4.000 15 H 0.153 0.847 16 C -0.030 4.030 17 O -0.253 6.253 18 C 0.396 3.604 19 O -0.470 6.470 20 N -0.391 5.391 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.032 0.968 27 H 0.116 0.884 28 H 0.140 0.860 29 H 0.167 0.833 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -2.154 -1.888 12.496 12.820 hybrid contribution 0.947 0.053 -1.853 2.082 sum -1.207 -1.834 10.643 10.867 Atomic orbital electron populations 1.21477 0.97254 0.99187 0.98755 1.18924 0.92837 0.91099 0.86680 1.00791 1.21581 1.36145 1.08340 0.91922 0.92229 1.25674 0.95160 0.95444 1.02015 1.70067 1.45787 1.15261 1.24541 0.85625 0.78779 0.78637 0.78926 1.19835 1.21291 1.19385 1.60680 1.31882 1.32995 1.05487 1.22451 1.01325 0.93617 0.90739 1.22662 0.85150 0.97456 0.94748 0.84668 1.24833 0.76304 1.02546 0.99273 1.87214 1.26838 1.57525 1.53702 1.18733 0.85186 0.77885 0.78580 1.91010 1.15269 1.66085 1.74638 1.46180 1.09203 1.46165 1.37503 0.94721 0.94202 0.94574 0.92845 0.85319 0.96830 0.88352 0.85973 0.83294 0.71707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.27 71.98 0.67 -4.14 16 2 C 0.21 9.99 2.47 44.17 0.11 10.09 16 3 H -0.03 -1.36 7.74 -2.39 -0.02 -1.38 16 4 C -0.54 -28.43 8.48 25.60 0.22 -28.21 16 5 H 0.06 3.06 7.69 -2.91 -0.02 3.04 16 6 C 0.02 0.91 5.17 84.66 0.44 1.35 16 7 N -0.92 -51.91 12.16 21.45 0.26 -51.65 16 8 Si 0.95 42.56 29.55 68.60 2.03 44.59 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.68 -24.40 6.30 -495.44 -3.12 -27.52 16 13 C 0.05 1.34 5.07 86.30 0.44 1.77 16 14 C 0.10 2.04 4.04 45.25 0.18 2.22 16 15 H 0.14 2.03 8.14 -2.38 -0.02 2.01 16 16 C 0.04 0.68 7.88 72.35 0.57 1.25 16 17 O -0.34 -8.86 11.09 -47.35 -0.53 -9.39 16 18 C 0.64 19.79 9.16 129.86 1.19 20.98 16 19 O -0.58 -23.01 18.04 19.64 0.35 -22.65 16 20 N -0.72 -17.84 5.69 -569.21 -3.24 -21.08 16 21 H 0.03 1.72 6.83 -2.39 -0.02 1.71 16 22 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.04 1.36 7.55 -2.39 -0.02 1.35 16 24 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.33 11.87 7.04 -89.70 -0.63 11.24 16 26 H 0.01 0.42 8.05 -2.39 -0.02 0.40 16 27 H 0.10 2.40 7.51 -2.39 -0.02 2.38 16 28 H 0.12 1.54 7.73 -2.39 -0.02 1.52 16 29 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.44 10.67 8.14 -92.71 -0.75 9.92 16 Total: -1.00 -67.50 256.71 -0.66 -68.16 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -0.22 Total: 14.24 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 3.81 Total: 5.30 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -6.10 Total: -100.25 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.17 Total: -32.04 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -67.50 -0.66 -68.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308167004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.036 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds