Wall clock time and date at job start Mon Mar 30 2020 02:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47567 * 2 1 4 4 C 1.50696 * 109.47272 * 239.99632 * 2 1 3 5 5 H 1.07999 * 120.00344 * 240.00920 * 4 2 1 6 6 C 1.37880 * 119.99849 * 60.00031 * 4 2 1 7 7 N 1.31511 * 120.00038 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47271 * 120.00563 * 8 6 4 11 11 H 1.48508 * 109.47187 * 240.00368 * 8 6 4 12 12 N 1.46906 * 109.46776 * 120.00043 * 2 1 3 13 13 C 1.46902 * 110.99573 * 274.99857 * 12 2 1 14 14 C 1.53008 * 109.46622 * 179.97438 * 13 12 2 15 15 H 1.08992 * 110.50328 * 66.28806 * 14 13 12 16 16 C 1.54093 * 110.55943 * 189.18905 * 14 13 12 17 17 O 1.45707 * 104.00439 * 118.57321 * 16 14 13 18 18 C 1.33764 * 109.47978 * 359.97438 * 17 16 14 19 19 O 1.21516 * 123.07438 * 179.97438 * 18 17 16 20 20 N 1.34011 * 113.85536 * 359.97438 * 18 17 16 21 21 H 1.09000 * 109.47030 * 300.00758 * 1 2 3 22 22 H 1.09002 * 109.46644 * 60.00101 * 1 2 3 23 23 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99797 * 179.97438 * 7 6 4 25 25 H 1.00896 * 111.00309 * 151.04268 * 12 2 1 26 26 H 1.08990 * 109.47358 * 299.99539 * 13 12 2 27 27 H 1.09004 * 109.47457 * 60.00221 * 13 12 2 28 28 H 1.09002 * 110.52228 * 237.19985 * 16 14 13 29 29 H 1.08993 * 110.52290 * 359.94531 * 16 14 13 30 30 H 0.96999 * 125.55679 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1475 -2.2865 -3.6036 10 1 1.1681 -1.5867 -4.8164 11 1 3.1475 -0.1859 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5949 -0.5332 3.5746 15 1 3.6308 -0.8394 3.4294 16 6 2.4556 0.3337 4.8409 17 8 1.5517 -0.4285 5.6923 18 6 1.1969 -1.5573 5.0685 19 8 0.4468 -2.3782 5.5586 20 7 1.7442 -1.7002 3.8536 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7096 1.1616 -3.4845 25 1 2.9172 -1.1206 1.0289 26 1 2.7588 1.0461 2.1183 27 1 1.0870 0.6164 2.5525 28 1 3.4234 0.4589 5.3266 29 1 2.0222 1.3029 4.5946 30 1 1.6035 -2.4515 3.2564 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308167005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:50 Heat of formation + Delta-G solvation = -76.245351 kcal Electronic energy + Delta-G solvation = -14409.611412 eV Core-core repulsion = 11819.014572 eV Total energy + Delta-G solvation = -2590.596840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.42177 -37.17398 -36.34844 -34.51466 -32.45973 -30.28756 -28.21280 -25.49038 -24.55958 -22.12977 -21.74046 -19.89309 -18.00720 -17.07080 -16.85144 -16.05339 -15.07376 -14.88167 -14.18220 -14.11057 -13.86507 -13.41822 -13.23771 -12.64155 -12.17472 -11.65883 -11.31775 -11.00106 -10.84361 -10.66454 -10.51655 -10.38683 -10.23849 -10.07994 -9.15213 -8.93020 -8.58769 -7.52278 -6.13306 -4.20656 2.84254 2.93459 3.21956 3.30603 3.33626 3.68574 4.07267 4.32770 4.61885 4.87598 5.11894 5.18350 5.33456 5.40985 5.54739 5.90104 6.07359 6.74661 7.00981 7.03993 7.09244 7.32950 7.42139 7.66114 7.75002 8.12972 8.19218 8.29308 8.47930 8.88380 9.46163 10.92991 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058317 B = 0.006263 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.019887 B = 4469.456229 C = 4521.124013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.687 5.687 13 C 0.049 3.951 14 C 0.096 3.904 15 H 0.099 0.901 16 C 0.045 3.955 17 O -0.335 6.335 18 C 0.642 3.358 19 O -0.536 6.536 20 N -0.709 5.709 21 H 0.003 0.997 22 H 0.081 0.919 23 H 0.032 0.968 24 H 0.262 0.738 25 H 0.331 0.669 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.502 0.723 9.463 10.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.318 5.318 13 C -0.082 4.082 14 C -0.011 4.011 15 H 0.116 0.884 16 C -0.031 4.031 17 O -0.245 6.245 18 C 0.394 3.606 19 O -0.422 6.422 20 N -0.381 5.381 21 H 0.022 0.978 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.148 0.852 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 4.362 0.402 10.072 10.983 hybrid contribution 1.087 -0.045 -1.627 1.957 sum 5.449 0.357 8.445 10.056 Atomic orbital electron populations 1.21722 0.97737 0.99479 0.99407 1.19116 0.92681 0.92313 0.85270 0.97977 1.21265 1.31724 1.12649 0.90375 0.92093 1.24925 0.94936 0.94959 0.99155 1.69900 1.36455 1.22817 1.23547 0.86449 0.78651 0.79574 0.82768 1.19745 1.20911 1.21050 1.60723 1.31963 1.32985 1.06132 1.22352 1.00800 0.94296 0.90778 1.22490 0.96311 0.86726 0.95524 0.88361 1.24368 0.94418 0.95764 0.88512 1.87225 1.61858 1.32514 1.42900 1.18557 0.79936 0.81189 0.80874 1.91050 1.38576 1.42457 1.70148 1.45917 1.49642 1.24665 1.17857 0.97775 0.90023 0.94886 0.92851 0.85170 0.94259 0.90862 0.87730 0.87530 0.71395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.19 37.16 0.34 -2.65 16 2 C 0.21 5.01 2.60 -68.86 -0.18 4.83 16 3 H 0.00 0.07 7.80 -51.93 -0.40 -0.34 16 4 C -0.52 -13.52 8.59 -34.44 -0.30 -13.81 16 5 H 0.06 1.55 7.62 -52.49 -0.40 1.15 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.69 -12.62 6.09 -107.94 -0.66 -13.28 16 13 C 0.05 0.71 5.04 -3.82 -0.02 0.69 16 14 C 0.10 1.08 4.00 -67.04 -0.27 0.81 16 15 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 16 C 0.05 0.43 7.88 37.73 0.30 0.73 16 17 O -0.33 -4.74 11.09 -37.81 -0.42 -5.15 16 18 C 0.64 10.41 9.16 53.71 0.49 10.90 16 19 O -0.54 -10.75 18.04 -19.12 -0.34 -11.09 16 20 N -0.71 -9.70 5.85 -58.23 -0.34 -10.04 16 21 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 22 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.33 5.79 8.22 -39.29 -0.32 5.47 16 26 H 0.04 0.54 8.05 -51.93 -0.42 0.12 16 27 H 0.07 1.17 7.43 -51.93 -0.39 0.78 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.11 0.88 7.73 -51.93 -0.40 0.48 16 30 H 0.44 6.07 8.96 -40.82 -0.37 5.70 16 LS Contribution 257.08 15.07 3.87 3.87 Total: -1.00 -30.65 257.08 -5.81 -36.46 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.80 Total: 4.63 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 0.27 Total: 3.05 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.37 Total: -47.26 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.76 Total: -16.25 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.65 -5.81 -36.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308167005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.786 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds