Wall clock time and date at job start Mon Mar 30 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34635 * 116.99995 * 2 1 4 4 O 1.21516 * 120.00124 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00263 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00581 * 179.97438 * 5 3 2 7 7 C 1.53514 * 114.17336 * 205.00132 * 6 5 3 8 8 N 1.47483 * 87.92777 * 220.13697 * 7 6 5 9 9 C 1.46903 * 110.99717 * 138.70421 * 8 7 6 10 10 C 1.50694 * 109.47066 * 169.99804 * 9 8 7 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.47480 * 87.83900 * 27.00973 * 8 7 6 19 19 H 1.08998 * 109.47000 * 300.00023 * 1 2 3 20 20 H 1.09007 * 109.46898 * 60.00048 * 1 2 3 21 21 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 22 22 H 0.97006 * 119.99739 * 359.97438 * 5 3 2 23 23 H 1.09002 * 113.25289 * 337.95700 * 6 5 3 24 24 H 1.09000 * 113.47331 * 105.37375 * 7 6 5 25 25 H 1.08997 * 113.47627 * 334.90499 * 7 6 5 26 26 H 1.09007 * 109.47052 * 49.99488 * 9 8 7 27 27 H 1.09003 * 109.46808 * 290.00181 * 9 8 7 28 28 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 29 29 H 1.09004 * 113.47132 * 87.75237 * 18 8 7 30 30 H 1.09000 * 113.47538 * 218.21976 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0743 2.5755 0.0000 7 6 5.4909 2.5589 -0.5914 8 7 5.8932 3.4836 0.4848 9 6 7.2100 3.1209 1.0257 10 6 7.6962 4.2155 1.9402 11 1 7.0882 5.0931 2.1030 12 6 8.9180 4.0971 2.5682 13 7 9.6587 3.0287 2.3696 14 14 9.5211 5.4543 3.7012 15 1 10.8522 5.0875 4.2481 16 1 9.6314 6.7235 2.9383 17 1 8.5589 5.6304 4.8185 18 6 4.8091 2.9118 1.3051 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 3.9375 0.4566 0.0013 23 1 3.4428 3.3801 -0.3767 24 1 5.5510 2.9988 -1.5868 25 1 5.9755 1.5845 -0.5303 26 1 7.9165 2.9917 0.2057 27 1 7.1287 2.1891 1.5854 28 1 10.5184 2.9456 2.8111 29 1 5.1119 2.0315 1.8722 30 1 4.2915 3.6508 1.9169 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308253591.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:32 Heat of formation + Delta-G solvation = -42.498478 kcal Electronic energy + Delta-G solvation = -14063.245257 eV Core-core repulsion = 11474.111791 eV Total energy + Delta-G solvation = -2589.133466 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.54068 -39.28095 -36.39373 -34.14882 -32.73939 -29.27333 -27.58209 -25.48603 -25.09935 -22.25856 -20.88028 -19.95753 -18.40592 -17.05952 -16.49147 -16.34759 -15.43618 -14.96179 -14.33948 -14.11940 -13.93934 -13.30335 -12.67678 -12.27504 -12.16667 -12.02760 -11.52696 -11.25049 -10.87064 -10.79207 -10.60960 -10.58346 -10.23762 -9.80593 -9.29043 -8.96576 -8.46246 -7.99185 -6.06566 -4.07865 2.21442 2.83472 3.33489 3.36782 3.40701 4.24213 4.42260 4.73811 4.91038 5.02592 5.10011 5.28153 5.29706 5.35070 5.70878 5.87372 6.01088 6.13501 6.27556 6.37574 6.52950 6.57600 7.09984 7.44985 7.58617 7.80436 8.04538 8.35799 8.39868 8.99376 9.56495 11.04509 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.071879 B = 0.005326 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.447766 B = 5256.273261 C = 5326.014273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.376 6.376 3 C 0.645 3.355 4 O -0.574 6.574 5 N -0.694 5.694 6 C 0.126 3.874 7 C -0.011 4.011 8 N -0.460 5.460 9 C 0.161 3.839 10 C -0.507 4.507 11 H 0.064 0.936 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.901 3.099 15 H -0.288 1.288 16 H -0.275 1.275 17 H -0.277 1.277 18 C -0.004 4.004 19 H 0.062 0.938 20 H 0.062 0.938 21 H 0.100 0.900 22 H 0.406 0.594 23 H 0.127 0.873 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.005 0.995 28 H 0.262 0.738 29 H 0.068 0.932 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.391 -7.021 -4.774 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.290 6.290 3 C 0.398 3.602 4 O -0.463 6.463 5 N -0.352 5.352 6 C 0.022 3.978 7 C -0.141 4.141 8 N -0.184 5.184 9 C 0.035 3.965 10 C -0.545 4.545 11 H 0.082 0.918 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.729 3.271 15 H -0.213 1.213 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.134 4.134 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.118 0.882 22 H 0.242 0.758 23 H 0.145 0.855 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.526 -5.893 -4.832 15.525 hybrid contribution 0.695 -0.612 0.877 1.275 sum -12.831 -6.505 -3.954 14.920 Atomic orbital electron populations 1.23153 0.74695 1.03205 1.02693 1.86243 1.24043 1.31481 1.87252 1.18244 0.83736 0.82025 0.76210 1.90993 1.64641 1.34827 1.55814 1.44853 1.02685 1.10622 1.77028 1.22994 0.92352 0.83553 0.98881 1.24210 0.92815 0.97673 0.99413 1.69020 1.04779 1.40162 1.04392 1.20283 0.84982 0.95993 0.95248 1.21062 1.02988 1.04598 1.25895 0.91782 1.25003 0.96618 0.96031 0.97002 1.69942 1.12358 1.27784 1.43949 0.86509 0.77721 0.82083 0.80817 1.21333 1.20085 1.20225 1.24279 0.94084 0.99241 0.95807 0.91888 0.91958 0.88192 0.75848 0.85537 0.89688 0.91527 0.95104 0.97761 0.92816 0.91360 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 10.56 101.05 1.07 1.58 16 2 O -0.38 -4.68 10.62 -40.31 -0.43 -5.11 16 3 C 0.65 9.58 8.75 54.05 0.47 10.06 16 4 O -0.57 -10.20 15.73 -19.28 -0.30 -10.50 16 5 N -0.69 -9.50 5.40 -58.46 -0.32 -9.82 16 6 C 0.13 1.98 4.59 -67.72 -0.31 1.67 16 7 C -0.01 -0.18 7.45 -7.53 -0.06 -0.24 16 8 N -0.46 -9.80 6.32 -246.07 -1.55 -11.36 16 9 C 0.16 4.12 4.57 -4.98 -0.02 4.10 16 10 C -0.51 -14.39 9.39 -34.44 -0.32 -14.71 16 11 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 14 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.00 -0.07 7.53 -7.54 -0.06 -0.12 16 19 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.41 4.67 8.87 -40.82 -0.36 4.30 16 23 H 0.13 2.08 7.45 -51.93 -0.39 1.70 16 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 26 H 0.03 0.84 8.08 -51.92 -0.42 0.42 16 27 H 0.00 0.12 7.30 -51.93 -0.38 -0.26 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.07 1.28 7.42 -51.93 -0.39 0.89 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 264.33 15.07 3.98 3.98 Total: -1.00 -32.15 264.33 -6.23 -38.38 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.00 Total: -0.24 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 0.67 Total: 3.79 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.13 Total: -47.03 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.73 Total: -15.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.15 -6.23 -38.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308253591.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.123 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds